miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19283 3' -54.5 NC_004685.1 + 39703 0.69 0.672363
Target:  5'- cGCAGGCgaCCGACuacuccaGCCGGAUCAccgucaccgccaUCGAcaauGCg -3'
miRNA:   3'- -CGUCUG--GGCUG-------UGGCCUAGU------------AGCU----CG- -5'
19283 3' -54.5 NC_004685.1 + 14731 0.71 0.566335
Target:  5'- cGCuGGAgCCGGCACUGGucgaagcggcCAUCGAGUa -3'
miRNA:   3'- -CG-UCUgGGCUGUGGCCua--------GUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 52007 0.71 0.587607
Target:  5'- uCAGugCCGACGCCGGGg---CG-GCc -3'
miRNA:   3'- cGUCugGGCUGUGGCCUaguaGCuCG- -5'
19283 3' -54.5 NC_004685.1 + 20714 0.7 0.609021
Target:  5'- aGCAGGCUCaGGaggucaACCGGAUCGccuUCGAGa -3'
miRNA:   3'- -CGUCUGGG-CUg-----UGGCCUAGU---AGCUCg -5'
19283 3' -54.5 NC_004685.1 + 66884 0.7 0.609021
Target:  5'- gGCAGuCCC-ACAgCGGGUCGUCcucGGCg -3'
miRNA:   3'- -CGUCuGGGcUGUgGCCUAGUAGc--UCG- -5'
19283 3' -54.5 NC_004685.1 + 3217 0.7 0.641263
Target:  5'- gGCGGAaaugCCGGgGCgGGGUCGgggUCGGGCc -3'
miRNA:   3'- -CGUCUg---GGCUgUGgCCUAGU---AGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 65492 0.7 0.641263
Target:  5'- cGCAcGCCac-CACCGGGUaacCGUCGGGCa -3'
miRNA:   3'- -CGUcUGGgcuGUGGCCUA---GUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 49386 0.69 0.648784
Target:  5'- cGCAGugCCGACAgCUGGugagcacuuccucccCGUCGAGg -3'
miRNA:   3'- -CGUCugGGCUGU-GGCCua-------------GUAGCUCg -5'
19283 3' -54.5 NC_004685.1 + 11371 0.69 0.671294
Target:  5'- uGguGACCacuCGCCGGAggcuggcgcgaAUCGAGCg -3'
miRNA:   3'- -CguCUGGgcuGUGGCCUag---------UAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 67354 0.71 0.555772
Target:  5'- ---uACCCGGCGagCGGAauugcUCGUCGAGCg -3'
miRNA:   3'- cgucUGGGCUGUg-GCCU-----AGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 36854 0.71 0.555772
Target:  5'- cGCGcGGCUCGACACCGcGG-CGUCcGGCa -3'
miRNA:   3'- -CGU-CUGGGCUGUGGC-CUaGUAGcUCG- -5'
19283 3' -54.5 NC_004685.1 + 31695 0.71 0.54422
Target:  5'- gGCAGAacCCCaACACCGGAcguaagaccggcaUCGggggCGGGCa -3'
miRNA:   3'- -CGUCU--GGGcUGUGGCCU-------------AGUa---GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 48160 0.79 0.211596
Target:  5'- gGCuGGCCCGAUguggcCCGGcUCGUCGGGCa -3'
miRNA:   3'- -CGuCUGGGCUGu----GGCCuAGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 26213 0.76 0.300891
Target:  5'- cGCc--CCCGACGCCGGAcuUCAggcgcgCGAGCa -3'
miRNA:   3'- -CGucuGGGCUGUGGCCU--AGUa-----GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 44024 0.76 0.315795
Target:  5'- cGguGGCCCGACGCgCaGAUCAucUCGAuGCg -3'
miRNA:   3'- -CguCUGGGCUGUG-GcCUAGU--AGCU-CG- -5'
19283 3' -54.5 NC_004685.1 + 5718 0.75 0.347251
Target:  5'- cGCGGGugccagucacCCCGACacucGCCGGAUCGUCGGa- -3'
miRNA:   3'- -CGUCU----------GGGCUG----UGGCCUAGUAGCUcg -5'
19283 3' -54.5 NC_004685.1 + 24586 0.73 0.425879
Target:  5'- gGCGGACCCGagcggGCGCCGGAcaUC-UCGAa- -3'
miRNA:   3'- -CGUCUGGGC-----UGUGGCCU--AGuAGCUcg -5'
19283 3' -54.5 NC_004685.1 + 44761 0.73 0.464062
Target:  5'- uCGGACCCGACGCCGacaccgCG-CGGGCc -3'
miRNA:   3'- cGUCUGGGCUGUGGCcua---GUaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 45670 0.72 0.493838
Target:  5'- cCAGaacGCCCGACAgCUGGAg-GUCGGGCu -3'
miRNA:   3'- cGUC---UGGGCUGU-GGCCUagUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 22455 0.71 0.534826
Target:  5'- cCAGACCCucGCGUCGGGUCGcggCGAGCu -3'
miRNA:   3'- cGUCUGGGc-UGUGGCCUAGUa--GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.