miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19283 3' -54.5 NC_004685.1 + 66 0.66 0.814546
Target:  5'- aGCAGAaccCCCGGCAUCGGGggg--GGGUg -3'
miRNA:   3'- -CGUCU---GGGCUGUGGCCUaguagCUCG- -5'
19283 3' -54.5 NC_004685.1 + 135 0.68 0.736482
Target:  5'- cGCGGGCgCGGCuGCCGGGguggcCGggGAGCu -3'
miRNA:   3'- -CGUCUGgGCUG-UGGCCUa----GUagCUCG- -5'
19283 3' -54.5 NC_004685.1 + 719 0.67 0.786367
Target:  5'- gGguGAuCCCGACGCCGug----CGAGCc -3'
miRNA:   3'- -CguCU-GGGCUGUGGCcuaguaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 745 0.67 0.805323
Target:  5'- -aGGugCCGACgcaGCCGGAcagcgaaCAUCGuGGCa -3'
miRNA:   3'- cgUCugGGCUG---UGGCCUa------GUAGC-UCG- -5'
19283 3' -54.5 NC_004685.1 + 1379 0.69 0.662732
Target:  5'- uCGGACCCGcACACuCGGAcCcgCGGcGCg -3'
miRNA:   3'- cGUCUGGGC-UGUG-GCCUaGuaGCU-CG- -5'
19283 3' -54.5 NC_004685.1 + 3217 0.7 0.641263
Target:  5'- gGCGGAaaugCCGGgGCgGGGUCGgggUCGGGCc -3'
miRNA:   3'- -CGUCUg---GGCUgUGgCCUAGU---AGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 3437 0.66 0.857739
Target:  5'- gGCuGACCCG-CugCG-AUCGUUGcGGCg -3'
miRNA:   3'- -CGuCUGGGCuGugGCcUAGUAGC-UCG- -5'
19283 3' -54.5 NC_004685.1 + 3636 0.66 0.814546
Target:  5'- cCAGAUUCGACucuucgGCCGuGAgCGUUGAGCc -3'
miRNA:   3'- cGUCUGGGCUG------UGGC-CUaGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 3989 0.68 0.715752
Target:  5'- gGCAGACgacagCCGGC-CCGGuguaGUCGaCGGGCu -3'
miRNA:   3'- -CGUCUG-----GGCUGuGGCC----UAGUaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 4446 0.66 0.82269
Target:  5'- gGCGGugCCGcUACCGGcacaaacGUCAgcguugCGGGUg -3'
miRNA:   3'- -CGUCugGGCuGUGGCC-------UAGUa-----GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 5458 0.72 0.493838
Target:  5'- uGCGGGCC-GGCG-CGGGUCAUCcGGCg -3'
miRNA:   3'- -CGUCUGGgCUGUgGCCUAGUAGcUCG- -5'
19283 3' -54.5 NC_004685.1 + 5718 0.75 0.347251
Target:  5'- cGCGGGugccagucacCCCGACacucGCCGGAUCGUCGGa- -3'
miRNA:   3'- -CGUCU----------GGGCUG----UGGCCUAGUAGCUcg -5'
19283 3' -54.5 NC_004685.1 + 6572 0.75 0.355458
Target:  5'- gGCAG-CUCGGCACCGGcugggCGAGCa -3'
miRNA:   3'- -CGUCuGGGCUGUGGCCuaguaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 8358 0.69 0.652006
Target:  5'- gGUGGACaCCGACAgCGGGUCggUGAuGUg -3'
miRNA:   3'- -CGUCUG-GGCUGUgGCCUAGuaGCU-CG- -5'
19283 3' -54.5 NC_004685.1 + 8567 0.68 0.752782
Target:  5'- -gAGAcCCCGACGCCgcuggaaauggccaGGAUCGUCuuggacuGGGCc -3'
miRNA:   3'- cgUCU-GGGCUGUGG--------------CCUAGUAG-------CUCG- -5'
19283 3' -54.5 NC_004685.1 + 8724 0.66 0.841081
Target:  5'- cGCAGGgCCaGAcCAUCGGcAUCccCGAGCu -3'
miRNA:   3'- -CGUCUgGG-CU-GUGGCC-UAGuaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 9334 0.66 0.844482
Target:  5'- uCGGaACCCGACucgccggcgacgaagGCCGcggugaaacGAUCAUCGAGa -3'
miRNA:   3'- cGUC-UGGGCUG---------------UGGC---------CUAGUAGCUCg -5'
19283 3' -54.5 NC_004685.1 + 9740 0.66 0.844482
Target:  5'- gGCAGACCaccaugacgguguugCGGCACgGGuUCuccggUGAGCg -3'
miRNA:   3'- -CGUCUGG---------------GCUGUGgCCuAGua---GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 9934 0.66 0.823586
Target:  5'- cCGGGCCgUGACAaaCGGAUCAcCGAGg -3'
miRNA:   3'- cGUCUGG-GCUGUg-GCCUAGUaGCUCg -5'
19283 3' -54.5 NC_004685.1 + 10425 0.66 0.814546
Target:  5'- uGCAGACCaCGuuCGcCCGGucgcUCAUCGAaaacgGCa -3'
miRNA:   3'- -CGUCUGG-GCu-GU-GGCCu---AGUAGCU-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.