miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19284 3' -54.9 NC_004685.1 + 60671 1.11 0.000998
Target:  5'- aCGAACACCUCGCGCAGCAGCGUCAACg -3'
miRNA:   3'- -GCUUGUGGAGCGCGUCGUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 55161 0.85 0.069052
Target:  5'- uCGAGCACCa-GCGCGGCGcGCGUCGGCg -3'
miRNA:   3'- -GCUUGUGGagCGCGUCGU-CGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 61851 0.82 0.09988
Target:  5'- uGGGCACCUCGCGCugcGCAGCGaUGACa -3'
miRNA:   3'- gCUUGUGGAGCGCGu--CGUCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 41599 0.81 0.132007
Target:  5'- gCGAACGCCU-GCuGCAGCucGGCGUCGGCg -3'
miRNA:   3'- -GCUUGUGGAgCG-CGUCG--UCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 19444 0.8 0.139486
Target:  5'- cCGAACGCCgUGCGUGGC-GCGUCGGCg -3'
miRNA:   3'- -GCUUGUGGaGCGCGUCGuCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 14394 0.79 0.164308
Target:  5'- uCGAGCACgagcUGCaGCGGCAGCGUCAGCu -3'
miRNA:   3'- -GCUUGUGga--GCG-CGUCGUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 59477 0.77 0.214545
Target:  5'- uGGACAgCUCGgGCGGCGGCGgguugcCAGCg -3'
miRNA:   3'- gCUUGUgGAGCgCGUCGUCGCa-----GUUG- -5'
19284 3' -54.9 NC_004685.1 + 48904 0.77 0.226056
Target:  5'- gGGGCugC-CGCGCaucgccgagauAGCGGCGUCGACg -3'
miRNA:   3'- gCUUGugGaGCGCG-----------UCGUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 40610 0.75 0.305635
Target:  5'- cCGAACGCCgcCGCGcCAGCGGUcagcacgGUCGGCa -3'
miRNA:   3'- -GCUUGUGGa-GCGC-GUCGUCG-------CAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 14170 0.75 0.306387
Target:  5'- uGAACACCUCGCGCcugggccuGCAcauuuaCGUCGGCa -3'
miRNA:   3'- gCUUGUGGAGCGCGu-------CGUc-----GCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 61509 0.75 0.313986
Target:  5'- uCGAACccgGCCUCguGCGCGGCGGCaaucUCAGCg -3'
miRNA:   3'- -GCUUG---UGGAG--CGCGUCGUCGc---AGUUG- -5'
19284 3' -54.9 NC_004685.1 + 63005 0.74 0.321727
Target:  5'- uCGGGCuccuuggccccgGCCUUGCGCAGC-GCGUCAc- -3'
miRNA:   3'- -GCUUG------------UGGAGCGCGUCGuCGCAGUug -5'
19284 3' -54.9 NC_004685.1 + 35967 0.74 0.32961
Target:  5'- uGAucgGCACCUUGCGCAGUAccgucuugucGCcGUCGACg -3'
miRNA:   3'- gCU---UGUGGAGCGCGUCGU----------CG-CAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 52256 0.74 0.337635
Target:  5'- aGGGcCGCCuucaUCGCGCAGCcuccugccgguuGGCGUCGACc -3'
miRNA:   3'- gCUU-GUGG----AGCGCGUCG------------UCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 35916 0.74 0.3458
Target:  5'- -cAACGCCauguggauUCGCGCGGCugGGUGUCGGCg -3'
miRNA:   3'- gcUUGUGG--------AGCGCGUCG--UCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 24307 0.74 0.349106
Target:  5'- aCGGGCACCUCGUGgcgggcaggcggguuCGGCGaCGUCGACu -3'
miRNA:   3'- -GCUUGUGGAGCGC---------------GUCGUcGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 399 0.73 0.371138
Target:  5'- uCGAGCugCUCGUagGCGGCGGCGagcUCGGg -3'
miRNA:   3'- -GCUUGugGAGCG--CGUCGUCGC---AGUUg -5'
19284 3' -54.9 NC_004685.1 + 30843 0.73 0.388719
Target:  5'- gCGGGCACCgaccgGCGCGGCAGCcgaauuGUCGAa -3'
miRNA:   3'- -GCUUGUGGag---CGCGUCGUCG------CAGUUg -5'
19284 3' -54.9 NC_004685.1 + 31323 0.73 0.397713
Target:  5'- aCGggUACggCGCGCAGCAGCaggCGAUg -3'
miRNA:   3'- -GCuuGUGgaGCGCGUCGUCGca-GUUG- -5'
19284 3' -54.9 NC_004685.1 + 53345 0.72 0.416095
Target:  5'- gGGGCACCUCcaGCGCGGCgccGGUGgccgCGGCg -3'
miRNA:   3'- gCUUGUGGAG--CGCGUCG---UCGCa---GUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.