miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19284 3' -54.9 NC_004685.1 + 20772 0.69 0.596235
Target:  5'- -cGACGCCgcuaucucggcgaUGCGCGGCAGCcccGUCGGCa -3'
miRNA:   3'- gcUUGUGGa------------GCGCGUCGUCG---CAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 57953 0.71 0.504746
Target:  5'- uCGGGCACagcgggcCGUGC-GCGGUGUCAGCg -3'
miRNA:   3'- -GCUUGUGga-----GCGCGuCGUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 25891 0.71 0.515115
Target:  5'- aCGAAgGCCa-GCGCGGUgaGGuCGUCGACg -3'
miRNA:   3'- -GCUUgUGGagCGCGUCG--UC-GCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 50445 0.7 0.52557
Target:  5'- aGAACACCUUGgGCAGacuCGGCG-CGAa -3'
miRNA:   3'- gCUUGUGGAGCgCGUC---GUCGCaGUUg -5'
19284 3' -54.9 NC_004685.1 + 57636 0.7 0.54671
Target:  5'- uGcACGCCUCGCG-GGCcGCGUUGACc -3'
miRNA:   3'- gCuUGUGGAGCGCgUCGuCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 60609 0.7 0.54671
Target:  5'- -cAACACCUCGCG-GGCAGUaaCAACa -3'
miRNA:   3'- gcUUGUGGAGCGCgUCGUCGcaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 1156 0.69 0.578897
Target:  5'- gGGugGCCcucggccaUCGUGCAGCGGCaGUCGu- -3'
miRNA:   3'- gCUugUGG--------AGCGCGUCGUCG-CAGUug -5'
19284 3' -54.9 NC_004685.1 + 34887 0.69 0.589722
Target:  5'- uGGGCACC--GCGCAGCuGC-UCGGCa -3'
miRNA:   3'- gCUUGUGGagCGCGUCGuCGcAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 61491 0.69 0.589722
Target:  5'- aGAACgGCCgacCGCcCGGCGGCGUCGcgACg -3'
miRNA:   3'- gCUUG-UGGa--GCGcGUCGUCGCAGU--UG- -5'
19284 3' -54.9 NC_004685.1 + 62549 0.71 0.494467
Target:  5'- cCGAACA---CGUGguGCAGCGUCAGa -3'
miRNA:   3'- -GCUUGUggaGCGCguCGUCGCAGUUg -5'
19284 3' -54.9 NC_004685.1 + 31764 0.71 0.46423
Target:  5'- aGAGCACCUacgaCGUGCA-CGGCGgCAACg -3'
miRNA:   3'- gCUUGUGGA----GCGCGUcGUCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 29075 0.72 0.444618
Target:  5'- uGAcCGCUg-GCGCGGCGGCGUuCGGCa -3'
miRNA:   3'- gCUuGUGGagCGCGUCGUCGCA-GUUG- -5'
19284 3' -54.9 NC_004685.1 + 59477 0.77 0.214545
Target:  5'- uGGACAgCUCGgGCGGCGGCGgguugcCAGCg -3'
miRNA:   3'- gCUUGUgGAGCgCGUCGUCGCa-----GUUG- -5'
19284 3' -54.9 NC_004685.1 + 14170 0.75 0.306387
Target:  5'- uGAACACCUCGCGCcugggccuGCAcauuuaCGUCGGCa -3'
miRNA:   3'- gCUUGUGGAGCGCGu-------CGUc-----GCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 52256 0.74 0.337635
Target:  5'- aGGGcCGCCuucaUCGCGCAGCcuccugccgguuGGCGUCGACc -3'
miRNA:   3'- gCUU-GUGG----AGCGCGUCG------------UCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 35916 0.74 0.3458
Target:  5'- -cAACGCCauguggauUCGCGCGGCugGGUGUCGGCg -3'
miRNA:   3'- gcUUGUGG--------AGCGCGUCG--UCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 24307 0.74 0.349106
Target:  5'- aCGGGCACCUCGUGgcgggcaggcggguuCGGCGaCGUCGACu -3'
miRNA:   3'- -GCUUGUGGAGCGC---------------GUCGUcGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 399 0.73 0.371138
Target:  5'- uCGAGCugCUCGUagGCGGCGGCGagcUCGGg -3'
miRNA:   3'- -GCUUGugGAGCG--CGUCGUCGC---AGUUg -5'
19284 3' -54.9 NC_004685.1 + 31323 0.73 0.397713
Target:  5'- aCGggUACggCGCGCAGCAGCaggCGAUg -3'
miRNA:   3'- -GCuuGUGgaGCGCGUCGUCGca-GUUG- -5'
19284 3' -54.9 NC_004685.1 + 53345 0.72 0.416095
Target:  5'- gGGGCACCUCcaGCGCGGCgccGGUGgccgCGGCg -3'
miRNA:   3'- gCUUGUGGAG--CGCGUCG---UCGCa---GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.