miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19284 3' -54.9 NC_004685.1 + 162 0.66 0.800639
Target:  5'- gGAGCugCUCggcuugcccuuGCGCGGCGuGCGcgcggguuUCGGCg -3'
miRNA:   3'- gCUUGugGAG-----------CGCGUCGU-CGC--------AGUUG- -5'
19284 3' -54.9 NC_004685.1 + 399 0.73 0.371138
Target:  5'- uCGAGCugCUCGUagGCGGCGGCGagcUCGGg -3'
miRNA:   3'- -GCUUGugGAGCG--CGUCGUCGC---AGUUg -5'
19284 3' -54.9 NC_004685.1 + 1156 0.69 0.578897
Target:  5'- gGGugGCCcucggccaUCGUGCAGCGGCaGUCGu- -3'
miRNA:   3'- gCUugUGG--------AGCGCGUCGUCG-CAGUug -5'
19284 3' -54.9 NC_004685.1 + 5871 0.66 0.800639
Target:  5'- gGAucuGCACCgggagGCGCAggagcaggcGCAGCGUgAGCa -3'
miRNA:   3'- gCU---UGUGGag---CGCGU---------CGUCGCAgUUG- -5'
19284 3' -54.9 NC_004685.1 + 5910 0.66 0.78123
Target:  5'- gGGugGCCaUCGCGUucaucccucGCGGCG-CGACg -3'
miRNA:   3'- gCUugUGG-AGCGCGu--------CGUCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 8423 0.66 0.800639
Target:  5'- aGAugGCC-CGCGUAGC--CGUgGACg -3'
miRNA:   3'- gCUugUGGaGCGCGUCGucGCAgUUG- -5'
19284 3' -54.9 NC_004685.1 + 8694 0.67 0.709087
Target:  5'- cCGAGgGCCgCGCGUacuGGUGGCG-CAACu -3'
miRNA:   3'- -GCUUgUGGaGCGCG---UCGUCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 8717 0.69 0.610381
Target:  5'- cCGAACACCgagGUGCGGUGGCucgguuuGUCGAUg -3'
miRNA:   3'- -GCUUGUGGag-CGCGUCGUCG-------CAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 9890 0.68 0.655102
Target:  5'- uGGACGaCUCGgGCGGCGGCaccccgCAGCg -3'
miRNA:   3'- gCUUGUgGAGCgCGUCGUCGca----GUUG- -5'
19284 3' -54.9 NC_004685.1 + 10081 0.69 0.61147
Target:  5'- cCGAGauuCGCCggGCGCGGguGCaGUCGAUg -3'
miRNA:   3'- -GCUU---GUGGagCGCGUCguCG-CAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 10316 0.69 0.622375
Target:  5'- gGGACAgCUCaaGgGCaucgaGGCGGCGUCGGCu -3'
miRNA:   3'- gCUUGUgGAG--CgCG-----UCGUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 10367 0.68 0.676832
Target:  5'- gGAGCagACCgaccgUGCGCAGC-GCGUCGccaACa -3'
miRNA:   3'- gCUUG--UGGa----GCGCGUCGuCGCAGU---UG- -5'
19284 3' -54.9 NC_004685.1 + 12306 0.71 0.504746
Target:  5'- cCGAugACgCU-GCGCAGCuGGCGUCGGg -3'
miRNA:   3'- -GCUugUG-GAgCGCGUCG-UCGCAGUUg -5'
19284 3' -54.9 NC_004685.1 + 13798 0.67 0.698395
Target:  5'- --cACACCgUCG-GCGGguuCGGCGUCAGCa -3'
miRNA:   3'- gcuUGUGG-AGCgCGUC---GUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 14170 0.75 0.306387
Target:  5'- uGAACACCUCGCGCcugggccuGCAcauuuaCGUCGGCa -3'
miRNA:   3'- gCUUGUGGAGCGCGu-------CGUc-----GCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 14394 0.79 0.164308
Target:  5'- uCGAGCACgagcUGCaGCGGCAGCGUCAGCu -3'
miRNA:   3'- -GCUUGUGga--GCG-CGUCGUCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 18404 0.72 0.454367
Target:  5'- aGGugACCUCGCaCAGCgagGGUGUCGAg -3'
miRNA:   3'- gCUugUGGAGCGcGUCG---UCGCAGUUg -5'
19284 3' -54.9 NC_004685.1 + 19444 0.8 0.139486
Target:  5'- cCGAACGCCgUGCGUGGC-GCGUCGGCg -3'
miRNA:   3'- -GCUUGUGGaGCGCGUCGuCGCAGUUG- -5'
19284 3' -54.9 NC_004685.1 + 19780 0.67 0.713344
Target:  5'- uCGGACACCgagaaCGCGUGGCaguaccgcagugaguGGCG-CGACu -3'
miRNA:   3'- -GCUUGUGGa----GCGCGUCG---------------UCGCaGUUG- -5'
19284 3' -54.9 NC_004685.1 + 20772 0.69 0.596235
Target:  5'- -cGACGCCgcuaucucggcgaUGCGCGGCAGCcccGUCGGCa -3'
miRNA:   3'- gcUUGUGGa------------GCGCGUCGUCG---CAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.