miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19285 5' -57.9 NC_004685.1 + 60618 0.95 0.009786
Target:  5'- aCUCGGUGACCgcAACGUCGCGGGUGCg -3'
miRNA:   3'- -GAGCCACUGGgcUUGCAGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 65447 0.75 0.240304
Target:  5'- -gCGGUGGagaagcuggCCGAacGCGUCGcCGGGUGCg -3'
miRNA:   3'- gaGCCACUg--------GGCU--UGCAGC-GCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 4447 0.73 0.291864
Target:  5'- -gCGGUGccgcuaCCGGcacaaacgucaGCGUUGCGGGUGCa -3'
miRNA:   3'- gaGCCACug----GGCU-----------UGCAGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 25150 0.72 0.343749
Target:  5'- -gCGGcaGGCCCaGcGCGUUGCGGGUGUc -3'
miRNA:   3'- gaGCCa-CUGGG-CuUGCAGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 20086 0.72 0.359744
Target:  5'- gUCGGccaGCCCGccuacgagGGCG-CGCGGGUGCu -3'
miRNA:   3'- gAGCCac-UGGGC--------UUGCaGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 10474 0.71 0.401951
Target:  5'- aUCGG-GACCgCGGcAUGUUGcCGGGUGUg -3'
miRNA:   3'- gAGCCaCUGG-GCU-UGCAGC-GCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 32783 0.69 0.475623
Target:  5'- cCUCGGUGuucuGCCCG-ACGUgccCGCGGccGCg -3'
miRNA:   3'- -GAGCCAC----UGGGCuUGCA---GCGCCcaCG- -5'
19285 5' -57.9 NC_004685.1 + 8863 0.69 0.475623
Target:  5'- --gGGUGACCCGu-CGcCGCuGGUGUc -3'
miRNA:   3'- gagCCACUGGGCuuGCaGCGcCCACG- -5'
19285 5' -57.9 NC_004685.1 + 14726 0.69 0.495082
Target:  5'- -aCGGUGACCgaGGuguCGgUGUGGGUGCc -3'
miRNA:   3'- gaGCCACUGGg-CUu--GCaGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 63215 0.69 0.504947
Target:  5'- -cCGGUGACuCCGuuGCGgcCGCcagGGGUGCc -3'
miRNA:   3'- gaGCCACUG-GGCu-UGCa-GCG---CCCACG- -5'
19285 5' -57.9 NC_004685.1 + 63151 0.69 0.521906
Target:  5'- gUCGGUGGgCUGGccggucuugAUGUCgaccaccggcucggGCGGGUGCa -3'
miRNA:   3'- gAGCCACUgGGCU---------UGCAG--------------CGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 26418 0.69 0.524922
Target:  5'- aUCGacaugaUGGCCCGAGuCucuUCGCGGGUGUa -3'
miRNA:   3'- gAGCc-----ACUGGGCUU-Gc--AGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 20651 0.69 0.524922
Target:  5'- --aGGaagagGGCCaGAugGUCGCGGaGUGCc -3'
miRNA:   3'- gagCCa----CUGGgCUugCAGCGCC-CACG- -5'
19285 5' -57.9 NC_004685.1 + 25550 0.68 0.535022
Target:  5'- -aCGGUGAUCgCGGACugcagCGCGguGGUGCg -3'
miRNA:   3'- gaGCCACUGG-GCUUGca---GCGC--CCACG- -5'
19285 5' -57.9 NC_004685.1 + 39234 0.68 0.554394
Target:  5'- uCUCGGUGACCggcaacaacggcgCGAACGgCGuCGGGcaacGCc -3'
miRNA:   3'- -GAGCCACUGG-------------GCUUGCaGC-GCCCa---CG- -5'
19285 5' -57.9 NC_004685.1 + 33755 0.68 0.576037
Target:  5'- -cCGGcgaGACgUGGugcguCGUCGCGGGUGUc -3'
miRNA:   3'- gaGCCa--CUGgGCUu----GCAGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 2569 0.68 0.576037
Target:  5'- gUUGGUGuuguccucaCCGAACGUCGCcgccaGGGcgGCa -3'
miRNA:   3'- gAGCCACug-------GGCUUGCAGCG-----CCCa-CG- -5'
19285 5' -57.9 NC_004685.1 + 32611 0.68 0.586412
Target:  5'- aUCGGcugGACCCGcACGcugaaGUGGGUGg -3'
miRNA:   3'- gAGCCa--CUGGGCuUGCag---CGCCCACg -5'
19285 5' -57.9 NC_004685.1 + 56058 0.67 0.596822
Target:  5'- gUCgGGUGACCuCGGACagcUUGCGGuUGCg -3'
miRNA:   3'- gAG-CCACUGG-GCUUGc--AGCGCCcACG- -5'
19285 5' -57.9 NC_004685.1 + 59313 0.67 0.596822
Target:  5'- gUCGaUGGC---GGCGUCGCGGGUGUu -3'
miRNA:   3'- gAGCcACUGggcUUGCAGCGCCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.