miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19285 5' -57.9 NC_004685.1 + 31224 0.66 0.69075
Target:  5'- -cCGGUGGCaaGGGCGUCGgcuCGGGccuggucgGCa -3'
miRNA:   3'- gaGCCACUGggCUUGCAGC---GCCCa-------CG- -5'
19285 5' -57.9 NC_004685.1 + 56533 0.67 0.628183
Target:  5'- --aGGUGAgaccUUCGAGCGUC-UGGGUGUa -3'
miRNA:   3'- gagCCACU----GGGCUUGCAGcGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 25811 0.67 0.638654
Target:  5'- -gCGGUGGgCCGGucaGCGcCGCGGGcucucGCc -3'
miRNA:   3'- gaGCCACUgGGCU---UGCaGCGCCCa----CG- -5'
19285 5' -57.9 NC_004685.1 + 21365 0.67 0.649119
Target:  5'- gUCGGcGAUCUGGcagGCG--GCGGGUGCc -3'
miRNA:   3'- gAGCCaCUGGGCU---UGCagCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 68560 0.66 0.659571
Target:  5'- -gCGGgcgcCCCGAuGCGUCG-GGGUGUu -3'
miRNA:   3'- gaGCCacu-GGGCU-UGCAGCgCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 33508 0.66 0.669999
Target:  5'- -gUGGUGGCCC-AGCG-CGaCGGGUucGCc -3'
miRNA:   3'- gaGCCACUGGGcUUGCaGC-GCCCA--CG- -5'
19285 5' -57.9 NC_004685.1 + 10059 0.66 0.67104
Target:  5'- -gUGGUG-CCCGAGgaggcgguCGccgagauucgccgggCGCGGGUGCa -3'
miRNA:   3'- gaGCCACuGGGCUU--------GCa--------------GCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 5689 0.66 0.680395
Target:  5'- gCUCGGccggcaacgcUGGCugaCCGAGa--CGCGGGUGCc -3'
miRNA:   3'- -GAGCC----------ACUG---GGCUUgcaGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 64739 0.66 0.680395
Target:  5'- gUCGGUGACCCGu-CGcCGaacacCGGGaaucgGCu -3'
miRNA:   3'- gAGCCACUGGGCuuGCaGC-----GCCCa----CG- -5'
19285 5' -57.9 NC_004685.1 + 7373 0.67 0.617715
Target:  5'- aUCGGUGcCCaCGAugGUCcCGacggcaagcGGUGCg -3'
miRNA:   3'- gAGCCACuGG-GCUugCAGcGC---------CCACG- -5'
19285 5' -57.9 NC_004685.1 + 33170 0.67 0.617715
Target:  5'- -cCGGUGGCaccggCCGGugGUgggCGCcGGUGCg -3'
miRNA:   3'- gaGCCACUG-----GGCUugCA---GCGcCCACG- -5'
19285 5' -57.9 NC_004685.1 + 21179 0.67 0.617715
Target:  5'- cCUCGGUGGCUaCGucaacgUGUCGCGGcagGCg -3'
miRNA:   3'- -GAGCCACUGG-GCuu----GCAGCGCCca-CG- -5'
19285 5' -57.9 NC_004685.1 + 10474 0.71 0.401951
Target:  5'- aUCGG-GACCgCGGcAUGUUGcCGGGUGUg -3'
miRNA:   3'- gAGCCaCUGG-GCU-UGCAGC-GCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 8863 0.69 0.475623
Target:  5'- --gGGUGACCCGu-CGcCGCuGGUGUc -3'
miRNA:   3'- gagCCACUGGGCuuGCaGCGcCCACG- -5'
19285 5' -57.9 NC_004685.1 + 20651 0.69 0.524922
Target:  5'- --aGGaagagGGCCaGAugGUCGCGGaGUGCc -3'
miRNA:   3'- gagCCa----CUGGgCUugCAGCGCC-CACG- -5'
19285 5' -57.9 NC_004685.1 + 25550 0.68 0.535022
Target:  5'- -aCGGUGAUCgCGGACugcagCGCGguGGUGCg -3'
miRNA:   3'- gaGCCACUGG-GCUUGca---GCGC--CCACG- -5'
19285 5' -57.9 NC_004685.1 + 39234 0.68 0.554394
Target:  5'- uCUCGGUGACCggcaacaacggcgCGAACGgCGuCGGGcaacGCc -3'
miRNA:   3'- -GAGCCACUGG-------------GCUUGCaGC-GCCCa---CG- -5'
19285 5' -57.9 NC_004685.1 + 2569 0.68 0.576037
Target:  5'- gUUGGUGuuguccucaCCGAACGUCGCcgccaGGGcgGCa -3'
miRNA:   3'- gAGCCACug-------GGCUUGCAGCG-----CCCa-CG- -5'
19285 5' -57.9 NC_004685.1 + 33755 0.68 0.576037
Target:  5'- -cCGGcgaGACgUGGugcguCGUCGCGGGUGUc -3'
miRNA:   3'- gaGCCa--CUGgGCUu----GCAGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 59313 0.67 0.596822
Target:  5'- gUCGaUGGC---GGCGUCGCGGGUGUu -3'
miRNA:   3'- gAGCcACUGggcUUGCAGCGCCCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.