miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19285 5' -57.9 NC_004685.1 + 2569 0.68 0.576037
Target:  5'- gUUGGUGuuguccucaCCGAACGUCGCcgccaGGGcgGCa -3'
miRNA:   3'- gAGCCACug-------GGCUUGCAGCG-----CCCa-CG- -5'
19285 5' -57.9 NC_004685.1 + 3435 0.66 0.701053
Target:  5'- -gCGGcUGACCCGcugcgauCGUUGCGGcGcgGCa -3'
miRNA:   3'- gaGCC-ACUGGGCuu-----GCAGCGCC-Ca-CG- -5'
19285 5' -57.9 NC_004685.1 + 3658 0.67 0.635513
Target:  5'- -gCGGUGACCUguaccgccagGAcuaccgcgacgccgACGgcucggCGCGGGUGUa -3'
miRNA:   3'- gaGCCACUGGG----------CU--------------UGCa-----GCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 4447 0.73 0.291864
Target:  5'- -gCGGUGccgcuaCCGGcacaaacgucaGCGUUGCGGGUGCa -3'
miRNA:   3'- gaGCCACug----GGCU-----------UGCAGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 5689 0.66 0.680395
Target:  5'- gCUCGGccggcaacgcUGGCugaCCGAGa--CGCGGGUGCc -3'
miRNA:   3'- -GAGCC----------ACUG---GGCUUgcaGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 7373 0.67 0.617715
Target:  5'- aUCGGUGcCCaCGAugGUCcCGacggcaagcGGUGCg -3'
miRNA:   3'- gAGCCACuGG-GCUugCAGcGC---------CCACG- -5'
19285 5' -57.9 NC_004685.1 + 8376 0.66 0.680395
Target:  5'- gUCGGUGAUgugggaucgcaCCGAccUGUCGUGGGacgagGCg -3'
miRNA:   3'- gAGCCACUG-----------GGCUu-GCAGCGCCCa----CG- -5'
19285 5' -57.9 NC_004685.1 + 8863 0.69 0.475623
Target:  5'- --gGGUGACCCGu-CGcCGCuGGUGUc -3'
miRNA:   3'- gagCCACUGGGCuuGCaGCGcCCACG- -5'
19285 5' -57.9 NC_004685.1 + 10059 0.66 0.67104
Target:  5'- -gUGGUG-CCCGAGgaggcgguCGccgagauucgccgggCGCGGGUGCa -3'
miRNA:   3'- gaGCCACuGGGCUU--------GCa--------------GCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 10474 0.71 0.401951
Target:  5'- aUCGG-GACCgCGGcAUGUUGcCGGGUGUg -3'
miRNA:   3'- gAGCCaCUGG-GCU-UGCAGC-GCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 11222 0.67 0.637607
Target:  5'- -aCGGUGGCcgcgaaaucaccaCCGAggacauccugcACGcCGCGGGUGa -3'
miRNA:   3'- gaGCCACUG-------------GGCU-----------UGCaGCGCCCACg -5'
19285 5' -57.9 NC_004685.1 + 14726 0.69 0.495082
Target:  5'- -aCGGUGACCgaGGuguCGgUGUGGGUGCc -3'
miRNA:   3'- gaGCCACUGGg-CUu--GCaGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 17767 0.67 0.617715
Target:  5'- gUCGGUGAuUCCGGugGa---GGGUGCc -3'
miRNA:   3'- gAGCCACU-GGGCUugCagcgCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 20086 0.72 0.359744
Target:  5'- gUCGGccaGCCCGccuacgagGGCG-CGCGGGUGCu -3'
miRNA:   3'- gAGCCac-UGGGC--------UUGCaGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 20651 0.69 0.524922
Target:  5'- --aGGaagagGGCCaGAugGUCGCGGaGUGCc -3'
miRNA:   3'- gagCCa----CUGGgCUugCAGCGCC-CACG- -5'
19285 5' -57.9 NC_004685.1 + 21179 0.67 0.617715
Target:  5'- cCUCGGUGGCUaCGucaacgUGUCGCGGcagGCg -3'
miRNA:   3'- -GAGCCACUGG-GCuu----GCAGCGCCca-CG- -5'
19285 5' -57.9 NC_004685.1 + 21365 0.67 0.649119
Target:  5'- gUCGGcGAUCUGGcagGCG--GCGGGUGCc -3'
miRNA:   3'- gAGCCaCUGGGCU---UGCagCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 25150 0.72 0.343749
Target:  5'- -gCGGcaGGCCCaGcGCGUUGCGGGUGUc -3'
miRNA:   3'- gaGCCa-CUGGG-CuUGCAGCGCCCACG- -5'
19285 5' -57.9 NC_004685.1 + 25550 0.68 0.535022
Target:  5'- -aCGGUGAUCgCGGACugcagCGCGguGGUGCg -3'
miRNA:   3'- gaGCCACUGG-GCUUGca---GCGC--CCACG- -5'
19285 5' -57.9 NC_004685.1 + 25811 0.67 0.638654
Target:  5'- -gCGGUGGgCCGGucaGCGcCGCGGGcucucGCc -3'
miRNA:   3'- gaGCCACUgGGCU---UGCaGCGCCCa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.