miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19286 3' -61.4 NC_004685.1 + 59908 1.07 0.000466
Target:  5'- gUAGGCGAACCCCAGCCGCUCACCGGAg -3'
miRNA:   3'- -AUCCGCUUGGGGUCGGCGAGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 64171 0.78 0.074071
Target:  5'- -cGuaGAACCCCGGCCGCUCGgCGGc -3'
miRNA:   3'- auCcgCUUGGGGUCGGCGAGUgGCCu -5'
19286 3' -61.4 NC_004685.1 + 45954 0.74 0.123935
Target:  5'- gUAGGCGucuuccAGCCCCAGUggCGCUCGCCGu- -3'
miRNA:   3'- -AUCCGC------UUGGGGUCG--GCGAGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 24585 0.73 0.145306
Target:  5'- -cGGCGGACCCgAGCgGg-CGCCGGAc -3'
miRNA:   3'- auCCGCUUGGGgUCGgCgaGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 44702 0.72 0.188472
Target:  5'- cGGGcCGGACaCCCGGCCGCuguucaUCACCGu- -3'
miRNA:   3'- aUCC-GCUUG-GGGUCGGCG------AGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 63260 0.72 0.193361
Target:  5'- cAGGUGAugCCCuuGgCGC-CGCCGGAg -3'
miRNA:   3'- aUCCGCUugGGGu-CgGCGaGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 39705 0.72 0.193361
Target:  5'- cAGGCGAccgacuACUCCAGCCGgaUCACCGu- -3'
miRNA:   3'- aUCCGCU------UGGGGUCGGCg-AGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 62874 0.71 0.214039
Target:  5'- gGGGCGGugCgaagUAGCCGCcggUCACCGGGg -3'
miRNA:   3'- aUCCGCUugGg---GUCGGCG---AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 36786 0.71 0.233081
Target:  5'- -uGGCG-GCCCgAGCCGCagggcuggugcgucaUCACCGGc -3'
miRNA:   3'- auCCGCuUGGGgUCGGCG---------------AGUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 43865 0.7 0.236586
Target:  5'- cGGGCGAgaGCCCgCGG-CGCUgACCGGc -3'
miRNA:   3'- aUCCGCU--UGGG-GUCgGCGAgUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 3935 0.7 0.242526
Target:  5'- gAGGCGGccuggACCCuCAGCgGCUCAggcUCGGGc -3'
miRNA:   3'- aUCCGCU-----UGGG-GUCGgCGAGU---GGCCU- -5'
19286 3' -61.4 NC_004685.1 + 62144 0.7 0.251049
Target:  5'- cAGGCGGGCCaCCuGCaccgucaacgucaaGUUCGCCGGGu -3'
miRNA:   3'- aUCCGCUUGG-GGuCGg-------------CGAGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 31035 0.7 0.261091
Target:  5'- uUGGGCGAcuGCCaCAGCUGCUCAgcuuugccgcCCGGc -3'
miRNA:   3'- -AUCCGCU--UGGgGUCGGCGAGU----------GGCCu -5'
19286 3' -61.4 NC_004685.1 + 30596 0.7 0.267531
Target:  5'- -cGGCGAACCCguCGGCCGCgUUGCCa-- -3'
miRNA:   3'- auCCGCUUGGG--GUCGGCG-AGUGGccu -5'
19286 3' -61.4 NC_004685.1 + 17813 0.69 0.2741
Target:  5'- gAGGCGGGCa--AGCUGCUgGCCGGc -3'
miRNA:   3'- aUCCGCUUGgggUCGGCGAgUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 6462 0.69 0.280121
Target:  5'- -cGGC--ACCCCuggcGGCCGCaacggagUCACCGGAa -3'
miRNA:   3'- auCCGcuUGGGG----UCGGCG-------AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 51840 0.69 0.280797
Target:  5'- -cGGUGAGCaCCAGCauccCGCUCACCGa- -3'
miRNA:   3'- auCCGCUUGgGGUCG----GCGAGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 55669 0.69 0.280797
Target:  5'- -uGGCGAACUCgA-CCGCcucgUCGCCGGAa -3'
miRNA:   3'- auCCGCUUGGGgUcGGCG----AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 27833 0.69 0.287623
Target:  5'- cGGcGCGGAacaCCCGGCCGCcgugCACCacGGAg -3'
miRNA:   3'- aUC-CGCUUg--GGGUCGGCGa---GUGG--CCU- -5'
19286 3' -61.4 NC_004685.1 + 35106 0.69 0.287623
Target:  5'- cAGGCGcucggcAGCgUCGGCCGCggUCAUCGGAu -3'
miRNA:   3'- aUCCGC------UUGgGGUCGGCG--AGUGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.