miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19286 3' -61.4 NC_004685.1 + 452 0.66 0.414498
Target:  5'- -uGGCGcGCCCCuuacccguGGCCGC-CACCaugucGGAg -3'
miRNA:   3'- auCCGCuUGGGG--------UCGGCGaGUGG-----CCU- -5'
19286 3' -61.4 NC_004685.1 + 3811 0.66 0.441838
Target:  5'- gUGGGCGAcugucacgguCCCCAcgguGCUGCUCAUCGc- -3'
miRNA:   3'- -AUCCGCUu---------GGGGU----CGGCGAGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 3935 0.7 0.242526
Target:  5'- gAGGCGGccuggACCCuCAGCgGCUCAggcUCGGGc -3'
miRNA:   3'- aUCCGCU-----UGGG-GUCGgCGAGU---GGCCU- -5'
19286 3' -61.4 NC_004685.1 + 4751 0.66 0.441838
Target:  5'- -cGGCGcGCUcguggUCGGCgCGCUgGCCGGAu -3'
miRNA:   3'- auCCGCuUGG-----GGUCG-GCGAgUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 6462 0.69 0.280121
Target:  5'- -cGGC--ACCCCuggcGGCCGCaacggagUCACCGGAa -3'
miRNA:   3'- auCCGcuUGGGG----UCGGCG-------AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 8489 0.66 0.451176
Target:  5'- gAGGCuGAGCgCCGGugggguCCGCU-ACCGGAu -3'
miRNA:   3'- aUCCG-CUUGgGGUC------GGCGAgUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 8790 0.66 0.423496
Target:  5'- aGGGCuuGAAgCUCAcGCCGCggUCGCUGGAc -3'
miRNA:   3'- aUCCG--CUUgGGGU-CGGCG--AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 9542 0.66 0.460621
Target:  5'- cAGGCGGAucgUCCUGGCCGCgcccCGCaauGGAg -3'
miRNA:   3'- aUCCGCUU---GGGGUCGGCGa---GUGg--CCU- -5'
19286 3' -61.4 NC_004685.1 + 12622 0.67 0.363066
Target:  5'- aAGGcCGGGCaggaaaucgaCCGGCUGCUCgccGCCGGGc -3'
miRNA:   3'- aUCC-GCUUGg---------GGUCGGCGAG---UGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 14144 0.67 0.359798
Target:  5'- cUGGGCGAGCCCgaccgggugaagggCAuucagauGCUGCUCgacGCCGGGc -3'
miRNA:   3'- -AUCCGCUUGGG--------------GU-------CGGCGAG---UGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 14690 0.66 0.43261
Target:  5'- gAGGCGGugCCCgaggagggcaAGCUGCaCGCCGa- -3'
miRNA:   3'- aUCCGCUugGGG----------UCGGCGaGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 17680 0.67 0.405618
Target:  5'- gAGGCucACCCCgAGCaCGUgcugUCugCGGAg -3'
miRNA:   3'- aUCCGcuUGGGG-UCG-GCG----AGugGCCU- -5'
19286 3' -61.4 NC_004685.1 + 17813 0.69 0.2741
Target:  5'- gAGGCGGGCa--AGCUGCUgGCCGGc -3'
miRNA:   3'- aUCCGCUUGgggUCGGCGAgUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 24525 0.68 0.358172
Target:  5'- cUGGGUGAccaACCCCgAGCCGaacgagggcuuccacCUCAUCGGu -3'
miRNA:   3'- -AUCCGCU---UGGGG-UCGGC---------------GAGUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 24585 0.73 0.145306
Target:  5'- -cGGCGGACCCgAGCgGg-CGCCGGAc -3'
miRNA:   3'- auCCGCUUGGGgUCGgCgaGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 25887 0.66 0.413605
Target:  5'- gGGGCGGccgacgcugaucgACUCCGGCUuCUCGuuGGAg -3'
miRNA:   3'- aUCCGCU-------------UGGGGUCGGcGAGUggCCU- -5'
19286 3' -61.4 NC_004685.1 + 25996 0.66 0.451176
Target:  5'- cGGGCagGGugCgCAGCCGgUCGCCGa- -3'
miRNA:   3'- aUCCG--CUugGgGUCGGCgAGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 26219 0.69 0.308883
Target:  5'- --cGCGAugUCCAGCCaGaugUCGCCGGAc -3'
miRNA:   3'- aucCGCUugGGGUCGG-Cg--AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 27833 0.69 0.287623
Target:  5'- cGGcGCGGAacaCCCGGCCGCcgugCACCacGGAg -3'
miRNA:   3'- aUC-CGCUUg--GGGUCGGCGa---GUGG--CCU- -5'
19286 3' -61.4 NC_004685.1 + 28933 0.67 0.371325
Target:  5'- cUGGGCGGcggcaACCUUGGCgCGCUCACCc-- -3'
miRNA:   3'- -AUCCGCU-----UGGGGUCG-GCGAGUGGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.