miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19286 3' -61.4 NC_004685.1 + 54430 0.66 0.423496
Target:  5'- -cGGCGAcaGCCCaUAGCCauGCUCgGCCaGGAa -3'
miRNA:   3'- auCCGCU--UGGG-GUCGG--CGAG-UGG-CCU- -5'
19286 3' -61.4 NC_004685.1 + 28933 0.67 0.371325
Target:  5'- cUGGGCGGcggcaACCUUGGCgCGCUCACCc-- -3'
miRNA:   3'- -AUCCGCU-----UGGGGUCG-GCGAGUGGccu -5'
19286 3' -61.4 NC_004685.1 + 51009 0.67 0.39599
Target:  5'- aAGGUGGugcgGCCCCAGCCcugaucuGCgUCaggACCGGGg -3'
miRNA:   3'- aUCCGCU----UGGGGUCGG-------CG-AG---UGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 69549 0.67 0.396859
Target:  5'- -cGGCc-ACCCCggcAGCCGCgcccgCGCCGGu -3'
miRNA:   3'- auCCGcuUGGGG---UCGGCGa----GUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 17680 0.67 0.405618
Target:  5'- gAGGCucACCCCgAGCaCGUgcugUCugCGGAg -3'
miRNA:   3'- aUCCGcuUGGGG-UCG-GCG----AGugGCCU- -5'
19286 3' -61.4 NC_004685.1 + 56881 0.66 0.414498
Target:  5'- -cGGCacGCCcgCCAGCCGCUCGgcCUGGGc -3'
miRNA:   3'- auCCGcuUGG--GGUCGGCGAGU--GGCCU- -5'
19286 3' -61.4 NC_004685.1 + 45199 0.66 0.422591
Target:  5'- -cGGCGAccuguacGCCgCGGCCGa--GCCGGGu -3'
miRNA:   3'- auCCGCU-------UGGgGUCGGCgagUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 8790 0.66 0.423496
Target:  5'- aGGGCuuGAAgCUCAcGCCGCggUCGCUGGAc -3'
miRNA:   3'- aUCCG--CUUgGGGU-CGGCG--AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 58950 0.66 0.423496
Target:  5'- gAGcGCguuGAugUCCAGCCGCacCACCGGc -3'
miRNA:   3'- aUC-CG---CUugGGGUCGGCGa-GUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 24525 0.68 0.358172
Target:  5'- cUGGGUGAccaACCCCgAGCCGaacgagggcuuccacCUCAUCGGu -3'
miRNA:   3'- -AUCCGCU---UGGGG-UCGGC---------------GAGUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 61620 0.68 0.34614
Target:  5'- gUGGGCGAAcagcucaaucugcCCCCAGCUG-UCGCgGGu -3'
miRNA:   3'- -AUCCGCUU-------------GGGGUCGGCgAGUGgCCu -5'
19286 3' -61.4 NC_004685.1 + 52299 0.68 0.316231
Target:  5'- cAGGUaGAugguCCCCAGCCGgaCGCCGu- -3'
miRNA:   3'- aUCCG-CUu---GGGGUCGGCgaGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 24585 0.73 0.145306
Target:  5'- -cGGCGGACCCgAGCgGg-CGCCGGAc -3'
miRNA:   3'- auCCGCUUGGGgUCGgCgaGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 44702 0.72 0.188472
Target:  5'- cGGGcCGGACaCCCGGCCGCuguucaUCACCGu- -3'
miRNA:   3'- aUCC-GCUUG-GGGUCGGCG------AGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 39705 0.72 0.193361
Target:  5'- cAGGCGAccgacuACUCCAGCCGgaUCACCGu- -3'
miRNA:   3'- aUCCGCU------UGGGGUCGGCg-AGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 36786 0.71 0.233081
Target:  5'- -uGGCG-GCCCgAGCCGCagggcuggugcgucaUCACCGGc -3'
miRNA:   3'- auCCGCuUGGGgUCGGCG---------------AGUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 3935 0.7 0.242526
Target:  5'- gAGGCGGccuggACCCuCAGCgGCUCAggcUCGGGc -3'
miRNA:   3'- aUCCGCU-----UGGG-GUCGgCGAGU---GGCCU- -5'
19286 3' -61.4 NC_004685.1 + 62144 0.7 0.251049
Target:  5'- cAGGCGGGCCaCCuGCaccgucaacgucaaGUUCGCCGGGu -3'
miRNA:   3'- aUCCGCUUGG-GGuCGg-------------CGAGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 6462 0.69 0.280121
Target:  5'- -cGGC--ACCCCuggcGGCCGCaacggagUCACCGGAa -3'
miRNA:   3'- auCCGcuUGGGG----UCGGCG-------AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 51840 0.69 0.280797
Target:  5'- -cGGUGAGCaCCAGCauccCGCUCACCGa- -3'
miRNA:   3'- auCCGCUUGgGGUCG----GCGAGUGGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.