miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19287 5' -58.8 NC_004685.1 + 59507 1.06 0.001031
Target:  5'- cUCGACCCGGCCAUCGAGGAACGCCAAc -3'
miRNA:   3'- -AGCUGGGCCGGUAGCUCCUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 61600 0.77 0.120339
Target:  5'- cCGACCCGGCCAUC-AGauGCGCCGGa -3'
miRNA:   3'- aGCUGGGCCGGUAGcUCcuUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 18440 0.77 0.130488
Target:  5'- aUCGACCgGGCCAUCGAGaugGCGuCCGAc -3'
miRNA:   3'- -AGCUGGgCCGGUAGCUCcu-UGC-GGUU- -5'
19287 5' -58.8 NC_004685.1 + 63082 0.77 0.130488
Target:  5'- aCGGCCCGGCgGUUcGGGAACGuCCGAa -3'
miRNA:   3'- aGCUGGGCCGgUAGcUCCUUGC-GGUU- -5'
19287 5' -58.8 NC_004685.1 + 53463 0.76 0.141423
Target:  5'- uUCGACgCCGaGCCAguacaGGGGAACGCCGc -3'
miRNA:   3'- -AGCUG-GGC-CGGUag---CUCCUUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 58322 0.76 0.144092
Target:  5'- gUCGGCCCGGCCggcacagccucgguGUCGGGGcggguCGCCGGu -3'
miRNA:   3'- -AGCUGGGCCGG--------------UAGCUCCuu---GCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 13380 0.75 0.174785
Target:  5'- cUCGcCUCGGCCAUCGAGGAcuguccgguGCGCg-- -3'
miRNA:   3'- -AGCuGGGCCGGUAGCUCCU---------UGCGguu -5'
19287 5' -58.8 NC_004685.1 + 49610 0.74 0.201113
Target:  5'- gCGGgCUGGCCgacgaacgccaggugGUCGAGGAACGCCc- -3'
miRNA:   3'- aGCUgGGCCGG---------------UAGCUCCUUGCGGuu -5'
19287 5' -58.8 NC_004685.1 + 8783 0.74 0.209551
Target:  5'- aCGACCaccaCGGCCAUCGAGauacGCGCCGc -3'
miRNA:   3'- aGCUGG----GCCGGUAGCUCcu--UGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 39047 0.73 0.237907
Target:  5'- aUCGGCCgGGUCAcCG-GGAAUGCCGGg -3'
miRNA:   3'- -AGCUGGgCCGGUaGCuCCUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 16968 0.73 0.237907
Target:  5'- cCGacuGCCCGGCCggCGAGGGugGgCAGa -3'
miRNA:   3'- aGC---UGGGCCGGuaGCUCCUugCgGUU- -5'
19287 5' -58.8 NC_004685.1 + 4040 0.72 0.274073
Target:  5'- gUGACCaUGGCCAacaUCGAGGGcgaguuuuucugcuGCGCCGAc -3'
miRNA:   3'- aGCUGG-GCCGGU---AGCUCCU--------------UGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 1862 0.71 0.319021
Target:  5'- cUCGGCuUCGGCCAggUUGAGGAugGCGUCGGu -3'
miRNA:   3'- -AGCUG-GGCCGGU--AGCUCCU--UGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 45886 0.71 0.326645
Target:  5'- gCGACggugaaGGCCAUCGAGGAuCGCUg- -3'
miRNA:   3'- aGCUGgg----CCGGUAGCUCCUuGCGGuu -5'
19287 5' -58.8 NC_004685.1 + 32006 0.7 0.333621
Target:  5'- gUCGACCCGGCgGUgCGAGucacacuggagucGAACGuCCAu -3'
miRNA:   3'- -AGCUGGGCCGgUA-GCUC-------------CUUGC-GGUu -5'
19287 5' -58.8 NC_004685.1 + 16621 0.7 0.342296
Target:  5'- --cACCCGGCCGUCGcugguGGAGCGUgCAAc -3'
miRNA:   3'- agcUGGGCCGGUAGCu----CCUUGCG-GUU- -5'
19287 5' -58.8 NC_004685.1 + 44442 0.7 0.342296
Target:  5'- -gGGCUgGGCC--UGGGGGACGCCAGc -3'
miRNA:   3'- agCUGGgCCGGuaGCUCCUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 69030 0.7 0.342296
Target:  5'- cCGACCCGGCCGcCGAaauGGAGaGCUGAu -3'
miRNA:   3'- aGCUGGGCCGGUaGCU---CCUUgCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 37375 0.7 0.375192
Target:  5'- aUCGACCU-GUCAUCGuGGGACGCg-- -3'
miRNA:   3'- -AGCUGGGcCGGUAGCuCCUUGCGguu -5'
19287 5' -58.8 NC_004685.1 + 21820 0.69 0.383744
Target:  5'- gUUGGCCCGGCUG-CGAGcAGCaGCCAAg -3'
miRNA:   3'- -AGCUGGGCCGGUaGCUCcUUG-CGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.