miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19287 5' -58.8 NC_004685.1 + 36888 0.67 0.515831
Target:  5'- gUCGGCCgCGGCCG-CG-GGcACGUCGGg -3'
miRNA:   3'- -AGCUGG-GCCGGUaGCuCCuUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 41802 0.68 0.447087
Target:  5'- gUCGGCCCGGuuuCCGUCGAgccGGuGCGCa-- -3'
miRNA:   3'- -AGCUGGGCC---GGUAGCU---CCuUGCGguu -5'
19287 5' -58.8 NC_004685.1 + 30152 0.68 0.456605
Target:  5'- -aGcCCCGGCCAUCGcAGGuauCGCgGGa -3'
miRNA:   3'- agCuGGGCCGGUAGC-UCCuu-GCGgUU- -5'
19287 5' -58.8 NC_004685.1 + 30207 0.68 0.47596
Target:  5'- gUCGGCCugggcgccgCGGCCAUCuGGGcGACGCaCAAg -3'
miRNA:   3'- -AGCUGG---------GCCGGUAGcUCC-UUGCG-GUU- -5'
19287 5' -58.8 NC_004685.1 + 20967 0.68 0.47596
Target:  5'- gUCGGCCCGGUCAUCGAcuucaucgacucGGccCGuCCGc -3'
miRNA:   3'- -AGCUGGGCCGGUAGCU------------CCuuGC-GGUu -5'
19287 5' -58.8 NC_004685.1 + 66565 0.68 0.484802
Target:  5'- gCGGCCCugcggaagcgguuGGCCcUCGGGuuGCGCCAc -3'
miRNA:   3'- aGCUGGG-------------CCGGuAGCUCcuUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 51141 0.68 0.485789
Target:  5'- cCGAUCCGGCCAUC-AGcAACGUCc- -3'
miRNA:   3'- aGCUGGGCCGGUAGcUCcUUGCGGuu -5'
19287 5' -58.8 NC_004685.1 + 48172 0.67 0.495714
Target:  5'- gUGGCCCGGCuCGUCGGGcAGCaCCGu -3'
miRNA:   3'- aGCUGGGCCG-GUAGCUCcUUGcGGUu -5'
19287 5' -58.8 NC_004685.1 + 56065 0.67 0.505729
Target:  5'- gUCGugCuCGGCCG-CGGGGAacacgaacugcgGCGUCAu -3'
miRNA:   3'- -AGCugG-GCCGGUaGCUCCU------------UGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 30813 0.68 0.44143
Target:  5'- gUUGACCCguggaagguucagcaGGCUcaguggcagGUCGAGGA-CGCCAAg -3'
miRNA:   3'- -AGCUGGG---------------CCGG---------UAGCUCCUuGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 1287 0.69 0.42839
Target:  5'- cUCGGCCaCGGCaucagacacucCGUCGAGGAucagcACGUCGg -3'
miRNA:   3'- -AGCUGG-GCCG-----------GUAGCUCCU-----UGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 21820 0.69 0.383744
Target:  5'- gUUGGCCCGGCUG-CGAGcAGCaGCCAAg -3'
miRNA:   3'- -AGCUGGGCCGGUaGCUCcUUG-CGGUU- -5'
19287 5' -58.8 NC_004685.1 + 63082 0.77 0.130488
Target:  5'- aCGGCCCGGCgGUUcGGGAACGuCCGAa -3'
miRNA:   3'- aGCUGGGCCGgUAGcUCCUUGC-GGUU- -5'
19287 5' -58.8 NC_004685.1 + 58322 0.76 0.144092
Target:  5'- gUCGGCCCGGCCggcacagccucgguGUCGGGGcggguCGCCGGu -3'
miRNA:   3'- -AGCUGGGCCGG--------------UAGCUCCuu---GCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 13380 0.75 0.174785
Target:  5'- cUCGcCUCGGCCAUCGAGGAcuguccgguGCGCg-- -3'
miRNA:   3'- -AGCuGGGCCGGUAGCUCCU---------UGCGguu -5'
19287 5' -58.8 NC_004685.1 + 1862 0.71 0.319021
Target:  5'- cUCGGCuUCGGCCAggUUGAGGAugGCGUCGGu -3'
miRNA:   3'- -AGCUG-GGCCGGU--AGCUCCU--UGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 45886 0.71 0.326645
Target:  5'- gCGACggugaaGGCCAUCGAGGAuCGCUg- -3'
miRNA:   3'- aGCUGgg----CCGGUAGCUCCUuGCGGuu -5'
19287 5' -58.8 NC_004685.1 + 44442 0.7 0.342296
Target:  5'- -gGGCUgGGCC--UGGGGGACGCCAGc -3'
miRNA:   3'- agCUGGgCCGGuaGCUCCUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 16621 0.7 0.342296
Target:  5'- --cACCCGGCCGUCGcugguGGAGCGUgCAAc -3'
miRNA:   3'- agcUGGGCCGGUAGCu----CCUUGCG-GUU- -5'
19287 5' -58.8 NC_004685.1 + 37375 0.7 0.375192
Target:  5'- aUCGACCU-GUCAUCGuGGGACGCg-- -3'
miRNA:   3'- -AGCUGGGcCGGUAGCuCCUUGCGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.