miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19287 5' -58.8 NC_004685.1 + 438 0.66 0.599022
Target:  5'- aUCaGCCgCGGUCggUGAGGucGGCGCCAAa -3'
miRNA:   3'- -AGcUGG-GCCGGuaGCUCC--UUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 1287 0.69 0.42839
Target:  5'- cUCGGCCaCGGCaucagacacucCGUCGAGGAucagcACGUCGg -3'
miRNA:   3'- -AGCUGG-GCCG-----------GUAGCUCCU-----UGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 1862 0.71 0.319021
Target:  5'- cUCGGCuUCGGCCAggUUGAGGAugGCGUCGGu -3'
miRNA:   3'- -AGCUG-GGCCGGU--AGCUCCU--UGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 2207 0.67 0.546594
Target:  5'- uUCGACCCacaGGCCGgaUUGGGugccGggUGCCAGa -3'
miRNA:   3'- -AGCUGGG---CCGGU--AGCUC----CuuGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 2985 0.66 0.599022
Target:  5'- aUGGCgCGGUCGUCGGcGuGCGCCAc -3'
miRNA:   3'- aGCUGgGCCGGUAGCUcCuUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 3804 0.66 0.588453
Target:  5'- cCGugCUGGCUcgcaucucGUCGGgcgacGGGACGCCGc -3'
miRNA:   3'- aGCugGGCCGG--------UAGCU-----CCUUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 4040 0.72 0.274073
Target:  5'- gUGACCaUGGCCAacaUCGAGGGcgaguuuuucugcuGCGCCGAc -3'
miRNA:   3'- aGCUGG-GCCGGU---AGCUCCU--------------UGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 8135 0.68 0.47596
Target:  5'- cUGGCCCGGUuugucgacuaCAUCGucgacagccugGGGGugGCCAAa -3'
miRNA:   3'- aGCUGGGCCG----------GUAGC-----------UCCUugCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 8783 0.74 0.209551
Target:  5'- aCGACCaccaCGGCCAUCGAGauacGCGCCGc -3'
miRNA:   3'- aGCUGG----GCCGGUAGCUCcu--UGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 11125 0.67 0.515831
Target:  5'- aUCGACCUGGgCG-CGGuGGccGACGCCAc -3'
miRNA:   3'- -AGCUGGGCCgGUaGCU-CC--UUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 11654 0.68 0.447087
Target:  5'- uUCGACCCcgaggaGGCCAagGAGGcgucgcagguCGCCAAc -3'
miRNA:   3'- -AGCUGGG------CCGGUagCUCCuu--------GCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 11739 0.68 0.447087
Target:  5'- aCGGCCCGcuguGCC--CGAuGGAGCGCCGc -3'
miRNA:   3'- aGCUGGGC----CGGuaGCU-CCUUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 13380 0.75 0.174785
Target:  5'- cUCGcCUCGGCCAUCGAGGAcuguccgguGCGCg-- -3'
miRNA:   3'- -AGCuGGGCCGGUAGCUCCU---------UGCGguu -5'
19287 5' -58.8 NC_004685.1 + 14312 0.66 0.577919
Target:  5'- -gGACaCCGGCgaccucgacgaCAUCGAGcaguggauGAACGCCAAc -3'
miRNA:   3'- agCUG-GGCCG-----------GUAGCUC--------CUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 14888 0.68 0.485789
Target:  5'- gCGAa--GGCCcgCGAGGAGCGCa-- -3'
miRNA:   3'- aGCUgggCCGGuaGCUCCUUGCGguu -5'
19287 5' -58.8 NC_004685.1 + 16621 0.7 0.342296
Target:  5'- --cACCCGGCCGUCGcugguGGAGCGUgCAAc -3'
miRNA:   3'- agcUGGGCCGGUAGCu----CCUUGCG-GUU- -5'
19287 5' -58.8 NC_004685.1 + 16968 0.73 0.237907
Target:  5'- cCGacuGCCCGGCCggCGAGGGugGgCAGa -3'
miRNA:   3'- aGC---UGGGCCGGuaGCUCCUugCgGUU- -5'
19287 5' -58.8 NC_004685.1 + 17942 0.67 0.515831
Target:  5'- cCGAUCUGGCCGgaguUCGAGucAcCGCCGAu -3'
miRNA:   3'- aGCUGGGCCGGU----AGCUCcuU-GCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 18440 0.77 0.130488
Target:  5'- aUCGACCgGGCCAUCGAGaugGCGuCCGAc -3'
miRNA:   3'- -AGCUGGgCCGGUAGCUCcu-UGC-GGUU- -5'
19287 5' -58.8 NC_004685.1 + 20466 0.66 0.588453
Target:  5'- uUCGGCCgcguUGGCCA-CGcGGA-CGCCAGc -3'
miRNA:   3'- -AGCUGG----GCCGGUaGCuCCUuGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.