miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19290 3' -58.6 NC_004685.1 + 58525 1.1 0.000669
Target:  5'- uGCGGCCUGGUACGAAUCCACCCGCCGu -3'
miRNA:   3'- -CGCCGGACCAUGCUUAGGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 23013 0.76 0.169027
Target:  5'- -aGGCCcGGUGgGAugCCACCCGCCa -3'
miRNA:   3'- cgCCGGaCCAUgCUuaGGUGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 51437 0.73 0.26619
Target:  5'- uGCGGCaucGGUGCGAgcaccGUgCGCCCaGCCGa -3'
miRNA:   3'- -CGCCGga-CCAUGCU-----UAgGUGGG-CGGC- -5'
19290 3' -58.6 NC_004685.1 + 27025 0.72 0.284845
Target:  5'- aGCGGCUgauccGGUGCcugccuuggCCGCCCGCCa -3'
miRNA:   3'- -CGCCGGa----CCAUGcuua-----GGUGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 12663 0.72 0.307411
Target:  5'- cGCGGCCgcugucggaGGUGCGGgccgcagagaaGUUCGCCCGCa- -3'
miRNA:   3'- -CGCCGGa--------CCAUGCU-----------UAGGUGGGCGgc -5'
19290 3' -58.6 NC_004685.1 + 32014 0.71 0.329785
Target:  5'- gGCGGUgcgagucacaCUGGaguCGAacGUCCAUCCGCCGc -3'
miRNA:   3'- -CGCCG----------GACCau-GCU--UAGGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 10099 0.71 0.329785
Target:  5'- cGCaGCC-GGUGCGc--UCACCCGCCGc -3'
miRNA:   3'- -CGcCGGaCCAUGCuuaGGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 43058 0.71 0.360631
Target:  5'- cGCGGCCUGGcUGCcccaGAugcgCCACacgucggCCGCCGa -3'
miRNA:   3'- -CGCCGGACC-AUG----CUua--GGUG-------GGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 69594 0.71 0.361448
Target:  5'- aGCGGCCaacgGGcGCGcGUCCacacgggcgcgcGCCCGCCc -3'
miRNA:   3'- -CGCCGGa---CCaUGCuUAGG------------UGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 6657 0.7 0.369688
Target:  5'- cCGGUCUGGUGUGggUCgaCACCgCGCCc -3'
miRNA:   3'- cGCCGGACCAUGCuuAG--GUGG-GCGGc -5'
19290 3' -58.6 NC_004685.1 + 43520 0.7 0.369688
Target:  5'- uGCGGCCuacUGGUACGccaacggUCGCCgCGCCu -3'
miRNA:   3'- -CGCCGG---ACCAUGCuua----GGUGG-GCGGc -5'
19290 3' -58.6 NC_004685.1 + 55847 0.7 0.378055
Target:  5'- cGCGGUCagGGUGUGggUCUugCCGCa- -3'
miRNA:   3'- -CGCCGGa-CCAUGCuuAGGugGGCGgc -5'
19290 3' -58.6 NC_004685.1 + 22710 0.7 0.386548
Target:  5'- uCGGCgUGG-ACGAggCCACC-GCCGa -3'
miRNA:   3'- cGCCGgACCaUGCUuaGGUGGgCGGC- -5'
19290 3' -58.6 NC_004685.1 + 64094 0.7 0.395166
Target:  5'- cGCaGGUCUGGU-CGGggUCAUCCGCCc -3'
miRNA:   3'- -CG-CCGGACCAuGCUuaGGUGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 43750 0.7 0.403908
Target:  5'- uCGGaCUGGggcgcauCGAGUCgggCACCCGCCGa -3'
miRNA:   3'- cGCCgGACCau-----GCUUAG---GUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 67807 0.69 0.421752
Target:  5'- cGCGGCCUGac-CGAcgCCAUCCucaaccugGCCGa -3'
miRNA:   3'- -CGCCGGACcauGCUuaGGUGGG--------CGGC- -5'
19290 3' -58.6 NC_004685.1 + 25353 0.69 0.425377
Target:  5'- cGCGGCCaccgcgucgaccagGGUGCGc--CCGCCCaGCUGg -3'
miRNA:   3'- -CGCCGGa-------------CCAUGCuuaGGUGGG-CGGC- -5'
19290 3' -58.6 NC_004685.1 + 19291 0.69 0.43085
Target:  5'- cCGGCCUGGUcACGGcacuUCCAUCCaaggaucagGCCa -3'
miRNA:   3'- cGCCGGACCA-UGCUu---AGGUGGG---------CGGc -5'
19290 3' -58.6 NC_004685.1 + 40776 0.69 0.449386
Target:  5'- aGCGGCCcgGGU-CGAAguccugguUCCGgCgGCCGg -3'
miRNA:   3'- -CGCCGGa-CCAuGCUU--------AGGUgGgCGGC- -5'
19290 3' -58.6 NC_004685.1 + 58084 0.69 0.458817
Target:  5'- aGUGGCaUGGUGCGGccugcgCgGCUCGCCGc -3'
miRNA:   3'- -CGCCGgACCAUGCUua----GgUGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.