miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19290 3' -58.6 NC_004685.1 + 1340 0.67 0.558165
Target:  5'- cGCGaagcccugauuGCCUGGgggaGCaGAaguugAUCCugCCGCCGg -3'
miRNA:   3'- -CGC-----------CGGACCa---UG-CU-----UAGGugGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 1595 0.66 0.652176
Target:  5'- cGUGGUgaGG-GCGAGgaCCGCCUGCUGc -3'
miRNA:   3'- -CGCCGgaCCaUGCUUa-GGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 2217 0.66 0.617539
Target:  5'- -aGGCCggauugGGUGcCGggUgccagaccugccugCCGCCCgGCCGg -3'
miRNA:   3'- cgCCGGa-----CCAU-GCuuA--------------GGUGGG-CGGC- -5'
19290 3' -58.6 NC_004685.1 + 2872 0.67 0.583027
Target:  5'- uGCGGCC-GGUGCGcacggcgcuggccagGAUCgggCACCCgGCCc -3'
miRNA:   3'- -CGCCGGaCCAUGC---------------UUAG---GUGGG-CGGc -5'
19290 3' -58.6 NC_004685.1 + 3216 0.66 0.641684
Target:  5'- -aGGUgUGGUACGuccCCACCaaggcgGCCGa -3'
miRNA:   3'- cgCCGgACCAUGCuuaGGUGGg-----CGGC- -5'
19290 3' -58.6 NC_004685.1 + 3974 0.67 0.578865
Target:  5'- cGUGGCgucgCUGGUAUGAGccUUCACCaaaGCCc -3'
miRNA:   3'- -CGCCG----GACCAUGCUU--AGGUGGg--CGGc -5'
19290 3' -58.6 NC_004685.1 + 5489 0.66 0.620687
Target:  5'- cGUGGCCgacaUGGUgGCGg--CCAUcgCCGCCGa -3'
miRNA:   3'- -CGCCGG----ACCA-UGCuuaGGUG--GGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 6657 0.7 0.369688
Target:  5'- cCGGUCUGGUGUGggUCgaCACCgCGCCc -3'
miRNA:   3'- cGCCGGACCAUGCuuAG--GUGG-GCGGc -5'
19290 3' -58.6 NC_004685.1 + 6992 0.68 0.507462
Target:  5'- gGCGGCgaUGGaUGCGg--CUACCCGCgCGa -3'
miRNA:   3'- -CGCCGg-ACC-AUGCuuaGGUGGGCG-GC- -5'
19290 3' -58.6 NC_004685.1 + 9039 0.68 0.526522
Target:  5'- cGCGGucgucacCCUGG-ACGggUCgcgCACCCGCg- -3'
miRNA:   3'- -CGCC-------GGACCaUGCuuAG---GUGGGCGgc -5'
19290 3' -58.6 NC_004685.1 + 10099 0.71 0.329785
Target:  5'- cGCaGCC-GGUGCGc--UCACCCGCCGc -3'
miRNA:   3'- -CGcCGGaCCAUGCuuaGGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 11030 0.67 0.578865
Target:  5'- -aGGUgUGGU--GGAUCgACCUGCCGa -3'
miRNA:   3'- cgCCGgACCAugCUUAGgUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 11363 0.66 0.599726
Target:  5'- cGCaGGgCUGGUGa----CCACUCGCCGg -3'
miRNA:   3'- -CG-CCgGACCAUgcuuaGGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 12420 0.66 0.652176
Target:  5'- -gGGCaugUGGaGCGGcugugaCCGCCCGCCGc -3'
miRNA:   3'- cgCCGg--ACCaUGCUua----GGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 12531 0.66 0.599726
Target:  5'- uGC-GCCUGGagugcugcaccgUGCG-GUCCACCacCGCCGa -3'
miRNA:   3'- -CGcCGGACC------------AUGCuUAGGUGG--GCGGC- -5'
19290 3' -58.6 NC_004685.1 + 12663 0.72 0.307411
Target:  5'- cGCGGCCgcugucggaGGUGCGGgccgcagagaaGUUCGCCCGCa- -3'
miRNA:   3'- -CGCCGGa--------CCAUGCU-----------UAGGUGGGCGgc -5'
19290 3' -58.6 NC_004685.1 + 12722 0.68 0.527533
Target:  5'- uGCGGgCUGGUAucacCGAcgCCugcguguaCCGCCGc -3'
miRNA:   3'- -CGCCgGACCAU----GCUuaGGug------GGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 14361 0.66 0.641684
Target:  5'- aGCGGCUga-UGCGGG-CCGCUgGCCGc -3'
miRNA:   3'- -CGCCGGaccAUGCUUaGGUGGgCGGC- -5'
19290 3' -58.6 NC_004685.1 + 16726 0.67 0.578865
Target:  5'- gGCGGCCgcGGUGCGGcuGUCCGgCgGUgGc -3'
miRNA:   3'- -CGCCGGa-CCAUGCU--UAGGUgGgCGgC- -5'
19290 3' -58.6 NC_004685.1 + 18770 0.68 0.47799
Target:  5'- gGUGGCCgUGGcGCGcAUCUGaCCGCCGa -3'
miRNA:   3'- -CGCCGG-ACCaUGCuUAGGUgGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.