miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19290 3' -58.6 NC_004685.1 + 60146 0.67 0.558165
Target:  5'- cGCGGCCaGG-ACG-AUCCGCCUGa-- -3'
miRNA:   3'- -CGCCGGaCCaUGCuUAGGUGGGCggc -5'
19290 3' -58.6 NC_004685.1 + 9039 0.68 0.526522
Target:  5'- cGCGGucgucacCCUGG-ACGggUCgcgCACCCGCg- -3'
miRNA:   3'- -CGCC-------GGACCaUGCuuAG---GUGGGCGgc -5'
19290 3' -58.6 NC_004685.1 + 36390 0.68 0.527533
Target:  5'- gGCGGCCUGGgcaac-UUC-CCCGCCc -3'
miRNA:   3'- -CGCCGGACCaugcuuAGGuGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 21575 0.68 0.531583
Target:  5'- gGCGGCgCUGGgcagcgGCGAcgCCuaccuguucucgaCCGCCGc -3'
miRNA:   3'- -CGCCG-GACCa-----UGCUuaGGug-----------GGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 69232 0.67 0.537679
Target:  5'- gGCGGCCacgGGUAaGGGgcgcgCCACaauCGCCGg -3'
miRNA:   3'- -CGCCGGa--CCAUgCUUa----GGUGg--GCGGC- -5'
19290 3' -58.6 NC_004685.1 + 20334 0.67 0.547892
Target:  5'- -gGGCCggacGGcggcgGCGAAccgCUGCCCGCCGc -3'
miRNA:   3'- cgCCGGa---CCa----UGCUUa--GGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 40404 0.67 0.547892
Target:  5'- uCGGCCUGG-ACGAGaCCGaguggCCGaCCGg -3'
miRNA:   3'- cGCCGGACCaUGCUUaGGUg----GGC-GGC- -5'
19290 3' -58.6 NC_004685.1 + 62520 0.67 0.547892
Target:  5'- aCGGCUcGGacaccGCGAuggCCACCCcGCCGa -3'
miRNA:   3'- cGCCGGaCCa----UGCUua-GGUGGG-CGGC- -5'
19290 3' -58.6 NC_004685.1 + 1340 0.67 0.558165
Target:  5'- cGCGaagcccugauuGCCUGGgggaGCaGAaguugAUCCugCCGCCGg -3'
miRNA:   3'- -CGC-----------CGGACCa---UG-CU-----UAGGugGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 6992 0.68 0.507462
Target:  5'- gGCGGCgaUGGaUGCGg--CUACCCGCgCGa -3'
miRNA:   3'- -CGCCGg-ACC-AUGCuuaGGUGGGCG-GC- -5'
19290 3' -58.6 NC_004685.1 + 18770 0.68 0.47799
Target:  5'- gGUGGCCgUGGcGCGcAUCUGaCCGCCGa -3'
miRNA:   3'- -CGCCGG-ACCaUGCuUAGGUgGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 53250 0.68 0.476055
Target:  5'- gGCGGCCUGGcguccacgcuuCGGAUCgggaACCaGCCGg -3'
miRNA:   3'- -CGCCGGACCau---------GCUUAGg---UGGgCGGC- -5'
19290 3' -58.6 NC_004685.1 + 12663 0.72 0.307411
Target:  5'- cGCGGCCgcugucggaGGUGCGGgccgcagagaaGUUCGCCCGCa- -3'
miRNA:   3'- -CGCCGGa--------CCAUGCU-----------UAGGUGGGCGgc -5'
19290 3' -58.6 NC_004685.1 + 69594 0.71 0.361448
Target:  5'- aGCGGCCaacgGGcGCGcGUCCacacgggcgcgcGCCCGCCc -3'
miRNA:   3'- -CGCCGGa---CCaUGCuUAGG------------UGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 43520 0.7 0.369688
Target:  5'- uGCGGCCuacUGGUACGccaacggUCGCCgCGCCu -3'
miRNA:   3'- -CGCCGG---ACCAUGCuua----GGUGG-GCGGc -5'
19290 3' -58.6 NC_004685.1 + 22710 0.7 0.386548
Target:  5'- uCGGCgUGG-ACGAggCCACC-GCCGa -3'
miRNA:   3'- cGCCGgACCaUGCUuaGGUGGgCGGC- -5'
19290 3' -58.6 NC_004685.1 + 64094 0.7 0.395166
Target:  5'- cGCaGGUCUGGU-CGGggUCAUCCGCCc -3'
miRNA:   3'- -CG-CCGGACCAuGCUuaGGUGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 19291 0.69 0.43085
Target:  5'- cCGGCCUGGUcACGGcacuUCCAUCCaaggaucagGCCa -3'
miRNA:   3'- cGCCGGACCA-UGCUu---AGGUGGG---------CGGc -5'
19290 3' -58.6 NC_004685.1 + 23990 0.69 0.458817
Target:  5'- gGCGGgcaaggaaaaUCUGG-ACGAAUCUACC-GCCGa -3'
miRNA:   3'- -CGCC----------GGACCaUGCUUAGGUGGgCGGC- -5'
19290 3' -58.6 NC_004685.1 + 59711 0.69 0.468353
Target:  5'- cGgGGUCcucgGGUGCGGcguaGUCCACgUCGCCGc -3'
miRNA:   3'- -CgCCGGa---CCAUGCU----UAGGUG-GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.