miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 3' -55.7 NC_004685.1 + 55396 1.09 0.001373
Target:  5'- cCUCGGCGCCGCAUUCGAUCCACACGAu -3'
miRNA:   3'- -GAGCCGCGGCGUAAGCUAGGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 32830 0.79 0.168986
Target:  5'- -cCGGaCGCCGCGgugUCGAgCCGCGCGAu -3'
miRNA:   3'- gaGCC-GCGGCGUa--AGCUaGGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 20455 0.78 0.192808
Target:  5'- -aUGGCGCUGCGUUCGGccgcguuggCCACGCGGa -3'
miRNA:   3'- gaGCCGCGGCGUAAGCUa--------GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 57093 0.74 0.318863
Target:  5'- cCUCGGCGgCGCGUUCGG---ACACGGu -3'
miRNA:   3'- -GAGCCGCgGCGUAAGCUaggUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 17117 0.73 0.350494
Target:  5'- uUCGGCGCCGaCGgcaaCGAgcggCCGCugGAg -3'
miRNA:   3'- gAGCCGCGGC-GUaa--GCUa---GGUGugCU- -5'
19294 3' -55.7 NC_004685.1 + 37341 0.73 0.367126
Target:  5'- cCUCuGCGCCGUAcUCGAUgCCGCGCu- -3'
miRNA:   3'- -GAGcCGCGGCGUaAGCUA-GGUGUGcu -5'
19294 3' -55.7 NC_004685.1 + 66014 0.72 0.411021
Target:  5'- gUCGGCGUCGCGgua-GUCCugGCGGu -3'
miRNA:   3'- gAGCCGCGGCGUaagcUAGGugUGCU- -5'
19294 3' -55.7 NC_004685.1 + 25261 0.72 0.429468
Target:  5'- -gCGGUGCCGCccaaGGUCCACAgGGu -3'
miRNA:   3'- gaGCCGCGGCGuaagCUAGGUGUgCU- -5'
19294 3' -55.7 NC_004685.1 + 48892 0.72 0.438872
Target:  5'- cCUCGGUGCCGCGgggcugCCGCGCa- -3'
miRNA:   3'- -GAGCCGCGGCGUaagcuaGGUGUGcu -5'
19294 3' -55.7 NC_004685.1 + 56276 0.72 0.438872
Target:  5'- -cCGGUGCUGCGUcCGGUCCACcagcagaucguGCGGc -3'
miRNA:   3'- gaGCCGCGGCGUAaGCUAGGUG-----------UGCU- -5'
19294 3' -55.7 NC_004685.1 + 58645 0.71 0.447436
Target:  5'- uUCGGC-CCGCGUcggcaggUCGAUCCACcACa- -3'
miRNA:   3'- gAGCCGcGGCGUA-------AGCUAGGUG-UGcu -5'
19294 3' -55.7 NC_004685.1 + 63348 0.71 0.458027
Target:  5'- uUCGGCGUCGCAgcgggCGcaguUCCAgGCGGc -3'
miRNA:   3'- gAGCCGCGGCGUaa---GCu---AGGUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 67349 0.71 0.465813
Target:  5'- cCUCGGCgacgugcGCCGCGUcaacuggUCGcgcAUCCGCugGAg -3'
miRNA:   3'- -GAGCCG-------CGGCGUA-------AGC---UAGGUGugCU- -5'
19294 3' -55.7 NC_004685.1 + 60259 0.71 0.467771
Target:  5'- -aCGGCGCCGg--UCGGcCCGCAUGGg -3'
miRNA:   3'- gaGCCGCGGCguaAGCUaGGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 35833 0.71 0.47762
Target:  5'- gUCGGC-CCGUAUcacccuggcaUCGAgguguUCCACGCGAc -3'
miRNA:   3'- gAGCCGcGGCGUA----------AGCU-----AGGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 2960 0.71 0.48757
Target:  5'- -gCGGuCGCaccaGCGUUCGGUCCAgAUGGc -3'
miRNA:   3'- gaGCC-GCGg---CGUAAGCUAGGUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 38840 0.7 0.507756
Target:  5'- uUCGGCuGCCGCGccggUCGGUgCC-CGCGGu -3'
miRNA:   3'- gAGCCG-CGGCGUa---AGCUA-GGuGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 15201 0.7 0.507756
Target:  5'- gUCGGCGUgGCGUUCG--CCGgGCGGc -3'
miRNA:   3'- gAGCCGCGgCGUAAGCuaGGUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 31165 0.7 0.517982
Target:  5'- gCUCGcCGCCGCGc-CGGUCCuggGCGCGAu -3'
miRNA:   3'- -GAGCcGCGGCGUaaGCUAGG---UGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 59623 0.7 0.517982
Target:  5'- uCUCGGCGaCCGCcuccUCGGgcaCCACGCa- -3'
miRNA:   3'- -GAGCCGC-GGCGua--AGCUa--GGUGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.