miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 3' -55.7 NC_004685.1 + 290 0.66 0.760214
Target:  5'- uUCGGgGUCGUcgUCGAaCCcgaugcccgACACGAu -3'
miRNA:   3'- gAGCCgCGGCGuaAGCUaGG---------UGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 1317 0.66 0.789587
Target:  5'- --gGGCGCaCGCAcacUCGGacCCGCGCGGc -3'
miRNA:   3'- gagCCGCG-GCGUa--AGCUa-GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 2370 0.67 0.698386
Target:  5'- -cCGG-GCCaGCGUUCGG-CCAgCACGAg -3'
miRNA:   3'- gaGCCgCGG-CGUAAGCUaGGU-GUGCU- -5'
19294 3' -55.7 NC_004685.1 + 2960 0.71 0.48757
Target:  5'- -gCGGuCGCaccaGCGUUCGGUCCAgAUGGc -3'
miRNA:   3'- gaGCC-GCGg---CGUAAGCUAGGUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 3256 0.67 0.705756
Target:  5'- aUCGGCGCCGguUUgGGUUCGgugaagucgagguuCugGAa -3'
miRNA:   3'- gAGCCGCGGCguAAgCUAGGU--------------GugCU- -5'
19294 3' -55.7 NC_004685.1 + 4231 0.68 0.675042
Target:  5'- -cCGGCGaCGCGUUCGGccagcuucuccaCCGCGCGGu -3'
miRNA:   3'- gaGCCGCgGCGUAAGCUa-----------GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 4313 0.67 0.695217
Target:  5'- aCUCGGCgggccucuccgcgaGCCGCAgggUUGAUCCugugaGCACc- -3'
miRNA:   3'- -GAGCCG--------------CGGCGUa--AGCUAGG-----UGUGcu -5'
19294 3' -55.7 NC_004685.1 + 4569 0.68 0.655799
Target:  5'- uUCGG-GCCGCGUcaGGUCCGCucgcugGCGAa -3'
miRNA:   3'- gAGCCgCGGCGUAagCUAGGUG------UGCU- -5'
19294 3' -55.7 NC_004685.1 + 5949 0.68 0.622531
Target:  5'- aCUCGuuucacguguggaGCGCCGacuaCGAUCCGCGCGu -3'
miRNA:   3'- -GAGC-------------CGCGGCguaaGCUAGGUGUGCu -5'
19294 3' -55.7 NC_004685.1 + 6332 0.66 0.750159
Target:  5'- cCUCGGCGCUgaagGUGUUCGGuuUCCgaACGCa- -3'
miRNA:   3'- -GAGCCGCGG----CGUAAGCU--AGG--UGUGcu -5'
19294 3' -55.7 NC_004685.1 + 13372 0.68 0.623605
Target:  5'- --gGGUGCUGCucgacUUCGAggugaagCCGCACGAu -3'
miRNA:   3'- gagCCGCGGCGu----AAGCUa------GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 14041 0.68 0.645076
Target:  5'- -aCGGCaGCCGCAUccuguUCGGcgCC-CGCGAg -3'
miRNA:   3'- gaGCCG-CGGCGUA-----AGCUa-GGuGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 14577 0.68 0.623605
Target:  5'- aUUGGCGUCGCAggCGAcgUCgACAcCGAc -3'
miRNA:   3'- gAGCCGCGGCGUaaGCU--AGgUGU-GCU- -5'
19294 3' -55.7 NC_004685.1 + 15090 0.7 0.53867
Target:  5'- gCUCGGUGCCGa----GGUCCGCuCGGg -3'
miRNA:   3'- -GAGCCGCGGCguaagCUAGGUGuGCU- -5'
19294 3' -55.7 NC_004685.1 + 15201 0.7 0.507756
Target:  5'- gUCGGCGUgGCGUUCG--CCGgGCGGc -3'
miRNA:   3'- gAGCCGCGgCGUAAGCuaGGUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 15938 0.7 0.528289
Target:  5'- gCUCGGCGaaGCGUUCGugcugCCAaugGCGAc -3'
miRNA:   3'- -GAGCCGCggCGUAAGCua---GGUg--UGCU- -5'
19294 3' -55.7 NC_004685.1 + 17117 0.73 0.350494
Target:  5'- uUCGGCGCCGaCGgcaaCGAgcggCCGCugGAg -3'
miRNA:   3'- gAGCCGCGGC-GUaa--GCUa---GGUGugCU- -5'
19294 3' -55.7 NC_004685.1 + 17183 0.66 0.779939
Target:  5'- -gCGGCGCUGCGccUGAUCCAgAUc- -3'
miRNA:   3'- gaGCCGCGGCGUaaGCUAGGUgUGcu -5'
19294 3' -55.7 NC_004685.1 + 20455 0.78 0.192808
Target:  5'- -aUGGCGCUGCGUUCGGccgcguuggCCACGCGGa -3'
miRNA:   3'- gaGCCGCGGCGUAAGCUa--------GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 21942 0.7 0.548072
Target:  5'- aCUCGGCGUgGCAUcCGcaccaucAUCCGCugGu -3'
miRNA:   3'- -GAGCCGCGgCGUAaGC-------UAGGUGugCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.