miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 3' -55.7 NC_004685.1 + 4569 0.68 0.655799
Target:  5'- uUCGG-GCCGCGUcaGGUCCGCucgcugGCGAa -3'
miRNA:   3'- gAGCCgCGGCGUAagCUAGGUG------UGCU- -5'
19294 3' -55.7 NC_004685.1 + 51546 0.7 0.53867
Target:  5'- cCUUGaGCGCCGCggUCGGUgCCAC-CGc -3'
miRNA:   3'- -GAGC-CGCGGCGuaAGCUA-GGUGuGCu -5'
19294 3' -55.7 NC_004685.1 + 30714 0.69 0.602162
Target:  5'- uUCGGCGgCGCAgagUGGgauguUCCGCAUGGc -3'
miRNA:   3'- gAGCCGCgGCGUaa-GCU-----AGGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 5949 0.68 0.622531
Target:  5'- aCUCGuuucacguguggaGCGCCGacuaCGAUCCGCGCGu -3'
miRNA:   3'- -GAGC-------------CGCGGCguaaGCUAGGUGUGCu -5'
19294 3' -55.7 NC_004685.1 + 14577 0.68 0.623605
Target:  5'- aUUGGCGUCGCAggCGAcgUCgACAcCGAc -3'
miRNA:   3'- gAGCCGCGGCGUaaGCU--AGgUGU-GCU- -5'
19294 3' -55.7 NC_004685.1 + 51579 0.68 0.634341
Target:  5'- aCUCGGacggGCCGUAgUUGAUCCGCgACa- -3'
miRNA:   3'- -GAGCCg---CGGCGUaAGCUAGGUG-UGcu -5'
19294 3' -55.7 NC_004685.1 + 37620 0.68 0.645076
Target:  5'- gCUCGGCGCguuccccaGCgAUUCGGUCgCGgGCGGc -3'
miRNA:   3'- -GAGCCGCGg-------CG-UAAGCUAG-GUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 14041 0.68 0.645076
Target:  5'- -aCGGCaGCCGCAUccuguUCGGcgCC-CGCGAg -3'
miRNA:   3'- gaGCCG-CGGCGUA-----AGCUa-GGuGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 58486 0.68 0.654728
Target:  5'- gUCGGCGaacgcguugaacaUCGCAUcgugcUCGAUgCACGCGGc -3'
miRNA:   3'- gAGCCGC-------------GGCGUA-----AGCUAgGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 15938 0.7 0.528289
Target:  5'- gCUCGGCGaaGCGUUCGugcugCCAaugGCGAc -3'
miRNA:   3'- -GAGCCGCggCGUAAGCua---GGUg--UGCU- -5'
19294 3' -55.7 NC_004685.1 + 31165 0.7 0.517982
Target:  5'- gCUCGcCGCCGCGc-CGGUCCuggGCGCGAu -3'
miRNA:   3'- -GAGCcGCGGCGUaaGCUAGG---UGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 38840 0.7 0.507756
Target:  5'- uUCGGCuGCCGCGccggUCGGUgCC-CGCGGu -3'
miRNA:   3'- gAGCCG-CGGCGUa---AGCUA-GGuGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 66014 0.72 0.411021
Target:  5'- gUCGGCGUCGCGgua-GUCCugGCGGu -3'
miRNA:   3'- gAGCCGCGGCGUaagcUAGGugUGCU- -5'
19294 3' -55.7 NC_004685.1 + 25261 0.72 0.429468
Target:  5'- -gCGGUGCCGCccaaGGUCCACAgGGu -3'
miRNA:   3'- gaGCCGCGGCGuaagCUAGGUGUgCU- -5'
19294 3' -55.7 NC_004685.1 + 56276 0.72 0.438872
Target:  5'- -cCGGUGCUGCGUcCGGUCCACcagcagaucguGCGGc -3'
miRNA:   3'- gaGCCGCGGCGUAaGCUAGGUG-----------UGCU- -5'
19294 3' -55.7 NC_004685.1 + 58645 0.71 0.447436
Target:  5'- uUCGGC-CCGCGUcggcaggUCGAUCCACcACa- -3'
miRNA:   3'- gAGCCGcGGCGUA-------AGCUAGGUG-UGcu -5'
19294 3' -55.7 NC_004685.1 + 63348 0.71 0.458027
Target:  5'- uUCGGCGUCGCAgcgggCGcaguUCCAgGCGGc -3'
miRNA:   3'- gAGCCGCGGCGUaa---GCu---AGGUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 60259 0.71 0.467771
Target:  5'- -aCGGCGCCGg--UCGGcCCGCAUGGg -3'
miRNA:   3'- gaGCCGCGGCguaAGCUaGGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 35833 0.71 0.47762
Target:  5'- gUCGGC-CCGUAUcacccuggcaUCGAgguguUCCACGCGAc -3'
miRNA:   3'- gAGCCGcGGCGUA----------AGCU-----AGGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 2960 0.71 0.48757
Target:  5'- -gCGGuCGCaccaGCGUUCGGUCCAgAUGGc -3'
miRNA:   3'- gaGCC-GCGg---CGUAAGCUAGGUgUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.