miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 5' -60.7 NC_004685.1 + 55431 1.13 0.000271
Target:  5'- gCCUCGCCGGUCUCGGCUUCGCGCCGCa -3'
miRNA:   3'- -GGAGCGGCCAGAGCCGAAGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 43242 0.79 0.084629
Target:  5'- aCCaCGCCGGUCUCGugaccgucggaGCUUCGgaGCCGCu -3'
miRNA:   3'- -GGaGCGGCCAGAGC-----------CGAAGCg-CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 25796 0.77 0.119435
Target:  5'- gCUCGCCGGgcagCGGCggugggccggUCaGCGCCGCg -3'
miRNA:   3'- gGAGCGGCCaga-GCCGa---------AG-CGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 33180 0.73 0.209671
Target:  5'- uUCUCGCUGGUCUCGGUccacgaCGCGaaGUc -3'
miRNA:   3'- -GGAGCGGCCAGAGCCGaa----GCGCggCG- -5'
19294 5' -60.7 NC_004685.1 + 32189 0.73 0.213867
Target:  5'- aCCUCGCCaGGgCUgGGCggguucucccagUCGaCGCCGCc -3'
miRNA:   3'- -GGAGCGG-CCaGAgCCGa-----------AGC-GCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 57831 0.73 0.214927
Target:  5'- gCCUCGCCGaGcaggUCGGCggUCGCGCC-Ca -3'
miRNA:   3'- -GGAGCGGC-Cag--AGCCGa-AGCGCGGcG- -5'
19294 5' -60.7 NC_004685.1 + 35020 0.73 0.214927
Target:  5'- uCCUCGCCGaaCUCGcCggCGCGCUGCc -3'
miRNA:   3'- -GGAGCGGCcaGAGCcGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 33773 0.72 0.225779
Target:  5'- uCgUCGCgGGUgUCGGCgacaGCGaCCGCa -3'
miRNA:   3'- -GgAGCGgCCAgAGCCGaag-CGC-GGCG- -5'
19294 5' -60.7 NC_004685.1 + 35098 0.72 0.225779
Target:  5'- uCCUCgGCCaGGcgCUCGGCagcgUCG-GCCGCg -3'
miRNA:   3'- -GGAG-CGG-CCa-GAGCCGa---AGCgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 65672 0.72 0.242924
Target:  5'- uCCUUuCUGGUgUUGGCgcacgUCGCGCCGg -3'
miRNA:   3'- -GGAGcGGCCAgAGCCGa----AGCGCGGCg -5'
19294 5' -60.7 NC_004685.1 + 43051 0.72 0.242924
Target:  5'- gCUCGUCGGUg-CGGCggUGCucGCCGCg -3'
miRNA:   3'- gGAGCGGCCAgaGCCGaaGCG--CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 57400 0.72 0.242924
Target:  5'- uUCUCcCCGGUCgcggCGGCUUCG-GCCa- -3'
miRNA:   3'- -GGAGcGGCCAGa---GCCGAAGCgCGGcg -5'
19294 5' -60.7 NC_004685.1 + 55230 0.72 0.254946
Target:  5'- gCCUCGCuCGGcccaCUgGGCUUU-CGCCGCc -3'
miRNA:   3'- -GGAGCG-GCCa---GAgCCGAAGcGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 11400 0.72 0.254946
Target:  5'- aUCgagCGCCgGGUUUCGGCggUgGCcGCCGCu -3'
miRNA:   3'- -GGa--GCGG-CCAGAGCCGa-AgCG-CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 26529 0.71 0.267452
Target:  5'- gUCUCGCCGccgcaCUCGGUg-CGCGUCGCc -3'
miRNA:   3'- -GGAGCGGCca---GAGCCGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 5532 0.71 0.28045
Target:  5'- uUCUacgaGCUGGUCaUCGGCacgcugCGCGCCGa -3'
miRNA:   3'- -GGAg---CGGCCAG-AGCCGaa----GCGCGGCg -5'
19294 5' -60.7 NC_004685.1 + 56701 0.71 0.287134
Target:  5'- cCCaCGCCGGUCaUgGGgaUCGgGUCGCu -3'
miRNA:   3'- -GGaGCGGCCAG-AgCCgaAGCgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 55092 0.71 0.300878
Target:  5'- uUCUCGCC-GUCgUCGGUgUCGaCGUCGCc -3'
miRNA:   3'- -GGAGCGGcCAG-AGCCGaAGC-GCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 55262 0.71 0.300878
Target:  5'- cCUUCGCCucGGcCUCGGCgcgcagcugaCGCuGCCGCu -3'
miRNA:   3'- -GGAGCGG--CCaGAGCCGaa--------GCG-CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 56171 0.7 0.307939
Target:  5'- gCCUCGUCGGgg-CGGUcccgGCGCUGCa -3'
miRNA:   3'- -GGAGCGGCCagaGCCGaag-CGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.