miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 5' -60.7 NC_004685.1 + 37698 0.68 0.428732
Target:  5'- -gUCGaCCGG-CUCGGUgaaggUCGuCGCCGa -3'
miRNA:   3'- ggAGC-GGCCaGAGCCGa----AGC-GCGGCg -5'
19294 5' -60.7 NC_004685.1 + 20774 0.7 0.345129
Target:  5'- --aCGCCGcuaUCUCGGCgaUGCGCgGCa -3'
miRNA:   3'- ggaGCGGCc--AGAGCCGaaGCGCGgCG- -5'
19294 5' -60.7 NC_004685.1 + 65523 0.69 0.360882
Target:  5'- gCUCgGCCGGg--UGGUUUCGaCGCCGg -3'
miRNA:   3'- gGAG-CGGCCagaGCCGAAGC-GCGGCg -5'
19294 5' -60.7 NC_004685.1 + 62174 0.69 0.377129
Target:  5'- gUUCGCCGGguaCGGCUU-GCGgcCCGCg -3'
miRNA:   3'- gGAGCGGCCagaGCCGAAgCGC--GGCG- -5'
19294 5' -60.7 NC_004685.1 + 58583 0.69 0.377129
Target:  5'- --aUGCCcaacGUCUCGGCgUCGCGcCCGUu -3'
miRNA:   3'- ggaGCGGc---CAGAGCCGaAGCGC-GGCG- -5'
19294 5' -60.7 NC_004685.1 + 16009 0.69 0.385435
Target:  5'- gCCgUgGCUGGUCaacgUCGaGCUgaagaagggcgCGCGCCGCg -3'
miRNA:   3'- -GG-AgCGGCCAG----AGC-CGAa----------GCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 18067 0.68 0.402406
Target:  5'- --cCGUgGGccacCUgGGCUUCGgGCCGCa -3'
miRNA:   3'- ggaGCGgCCa---GAgCCGAAGCgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 4027 0.68 0.402406
Target:  5'- cCUUCGCgCGG-CUCGGgUUCGgGCaCGg -3'
miRNA:   3'- -GGAGCG-GCCaGAGCCgAAGCgCG-GCg -5'
19294 5' -60.7 NC_004685.1 + 2757 0.68 0.411067
Target:  5'- gUCUCGUCGGgcaCGGUgcCGCGgCGCg -3'
miRNA:   3'- -GGAGCGGCCagaGCCGaaGCGCgGCG- -5'
19294 5' -60.7 NC_004685.1 + 40521 0.7 0.337439
Target:  5'- uCCUgGCCGGacugUUCGGCUaUC-CGaCCGCa -3'
miRNA:   3'- -GGAgCGGCCa---GAGCCGA-AGcGC-GGCG- -5'
19294 5' -60.7 NC_004685.1 + 30066 0.7 0.337439
Target:  5'- gCggGCCGG-UUCGGCaaccuguucCGCGCCGCg -3'
miRNA:   3'- gGagCGGCCaGAGCCGaa-------GCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 41715 0.7 0.307939
Target:  5'- aCCUCGCCcGUCguggCGGUgggcggCGUGaCCGCc -3'
miRNA:   3'- -GGAGCGGcCAGa---GCCGaa----GCGC-GGCG- -5'
19294 5' -60.7 NC_004685.1 + 33773 0.72 0.225779
Target:  5'- uCgUCGCgGGUgUCGGCgacaGCGaCCGCa -3'
miRNA:   3'- -GgAGCGgCCAgAGCCGaag-CGC-GGCG- -5'
19294 5' -60.7 NC_004685.1 + 43051 0.72 0.242924
Target:  5'- gCUCGUCGGUg-CGGCggUGCucGCCGCg -3'
miRNA:   3'- gGAGCGGCCAgaGCCGaaGCG--CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 65672 0.72 0.242924
Target:  5'- uCCUUuCUGGUgUUGGCgcacgUCGCGCCGg -3'
miRNA:   3'- -GGAGcGGCCAgAGCCGa----AGCGCGGCg -5'
19294 5' -60.7 NC_004685.1 + 55230 0.72 0.254946
Target:  5'- gCCUCGCuCGGcccaCUgGGCUUU-CGCCGCc -3'
miRNA:   3'- -GGAGCG-GCCa---GAgCCGAAGcGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 11400 0.72 0.254946
Target:  5'- aUCgagCGCCgGGUUUCGGCggUgGCcGCCGCu -3'
miRNA:   3'- -GGa--GCGG-CCAGAGCCGa-AgCG-CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 26529 0.71 0.267452
Target:  5'- gUCUCGCCGccgcaCUCGGUg-CGCGUCGCc -3'
miRNA:   3'- -GGAGCGGCca---GAGCCGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 55262 0.71 0.300878
Target:  5'- cCUUCGCCucGGcCUCGGCgcgcagcugaCGCuGCCGCu -3'
miRNA:   3'- -GGAGCGG--CCaGAGCCGaa--------GCG-CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 56171 0.7 0.307939
Target:  5'- gCCUCGUCGGgg-CGGUcccgGCGCUGCa -3'
miRNA:   3'- -GGAGCGGCCagaGCCGaag-CGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.