miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 5' -60.7 NC_004685.1 + 154 0.7 0.315125
Target:  5'- -gUgGCCGGggagcugCUCGGCUugcccUUGCGCgGCg -3'
miRNA:   3'- ggAgCGGCCa------GAGCCGA-----AGCGCGgCG- -5'
19294 5' -60.7 NC_004685.1 + 194 0.68 0.437731
Target:  5'- --gCGCgGGUUUCGGCgcgacgagugCGCGCUGg -3'
miRNA:   3'- ggaGCGgCCAGAGCCGaa--------GCGCGGCg -5'
19294 5' -60.7 NC_004685.1 + 2757 0.68 0.411067
Target:  5'- gUCUCGUCGGgcaCGGUgcCGCGgCGCg -3'
miRNA:   3'- -GGAGCGGCCagaGCCGaaGCGCgGCG- -5'
19294 5' -60.7 NC_004685.1 + 3682 0.69 0.360882
Target:  5'- aCCgcgaCGCCGacggCUCGGCgcggguguaUCGCGCCGa -3'
miRNA:   3'- -GGa---GCGGCca--GAGCCGa--------AGCGCGGCg -5'
19294 5' -60.7 NC_004685.1 + 4027 0.68 0.402406
Target:  5'- cCUUCGCgCGG-CUCGGgUUCGgGCaCGg -3'
miRNA:   3'- -GGAGCG-GCCaGAGCCgAAGCgCG-GCg -5'
19294 5' -60.7 NC_004685.1 + 4407 0.68 0.437731
Target:  5'- -gUCGCCGGUCgccgcgCGGaugagcuuggUUCGCgucagGCCGCg -3'
miRNA:   3'- ggAGCGGCCAGa-----GCCg---------AAGCG-----CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 5532 0.71 0.28045
Target:  5'- uUCUacgaGCUGGUCaUCGGCacgcugCGCGCCGa -3'
miRNA:   3'- -GGAg---CGGCCAG-AGCCGaa----GCGCGGCg -5'
19294 5' -60.7 NC_004685.1 + 6652 0.66 0.56316
Target:  5'- --aUGCgCGGUgccaUCGGUgaCGCGCUGCg -3'
miRNA:   3'- ggaGCG-GCCAg---AGCCGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 11400 0.72 0.254946
Target:  5'- aUCgagCGCCgGGUUUCGGCggUgGCcGCCGCu -3'
miRNA:   3'- -GGa--GCGG-CCAGAGCCGa-AgCG-CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 12793 0.67 0.484273
Target:  5'- gCCaUCGCCcaGGcCgagCGGCUggCGgGCCGUg -3'
miRNA:   3'- -GG-AGCGG--CCaGa--GCCGAa-GCgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 13364 0.66 0.543032
Target:  5'- aUUCGCCaGGgugcugCUCGaCUUCGaggugaaGCCGCa -3'
miRNA:   3'- gGAGCGG-CCa-----GAGCcGAAGCg------CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 16009 0.69 0.385435
Target:  5'- gCCgUgGCUGGUCaacgUCGaGCUgaagaagggcgCGCGCCGCg -3'
miRNA:   3'- -GG-AgCGGCCAG----AGC-CGAa----------GCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 16118 0.67 0.483319
Target:  5'- gCCgacgCGCacggccaCGGUCcccuggagUCGGC--CGCGCCGCg -3'
miRNA:   3'- -GGa---GCG-------GCCAG--------AGCCGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 18067 0.68 0.402406
Target:  5'- --cCGUgGGccacCUgGGCUUCGgGCCGCa -3'
miRNA:   3'- ggaGCGgCCa---GAgCCGAAGCgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 20774 0.7 0.345129
Target:  5'- --aCGCCGcuaUCUCGGCgaUGCGCgGCa -3'
miRNA:   3'- ggaGCGGCc--AGAGCCGaaGCGCGgCG- -5'
19294 5' -60.7 NC_004685.1 + 22848 0.69 0.352943
Target:  5'- -aUCGCCGGUgaaUUGcaGCcaCGCGCCGCa -3'
miRNA:   3'- ggAGCGGCCAg--AGC--CGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 24922 0.66 0.523147
Target:  5'- gCC-CGCgCGGUgUCGGCgUCGgGuCCGa -3'
miRNA:   3'- -GGaGCG-GCCAgAGCCGaAGCgC-GGCg -5'
19294 5' -60.7 NC_004685.1 + 25796 0.77 0.119435
Target:  5'- gCUCGCCGGgcagCGGCggugggccggUCaGCGCCGCg -3'
miRNA:   3'- gGAGCGGCCaga-GCCGa---------AG-CGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 26237 0.7 0.337439
Target:  5'- -gUCGCCGGacgCgccgGGCUU-GCGCCGCc -3'
miRNA:   3'- ggAGCGGCCa--Gag--CCGAAgCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 26529 0.71 0.267452
Target:  5'- gUCUCGCCGccgcaCUCGGUg-CGCGUCGCc -3'
miRNA:   3'- -GGAGCGGCca---GAGCCGaaGCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.