Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19295 | 5' | -56.4 | NC_004685.1 | + | 55226 | 1.12 | 0.00065 |
Target: 5'- cAGGUCGAAGCUGGACGACUCGCUGGCg -3' miRNA: 3'- -UCCAGCUUCGACCUGCUGAGCGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 66495 | 0.74 | 0.286632 |
Target: 5'- cAGGUCGggGCgcgccucccgcgccuUGG-CGGCcacagCGCUGGCc -3' miRNA: 3'- -UCCAGCuuCG---------------ACCuGCUGa----GCGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 9874 | 0.74 | 0.290873 |
Target: 5'- cGGGcCGGcacacuGCUGGACGACUCGggcGGCg -3' miRNA: 3'- -UCCaGCUu-----CGACCUGCUGAGCga-CCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 4747 | 0.73 | 0.320402 |
Target: 5'- uGGUCGgcGCgcucgUGGuCGGCgCGCUGGCc -3' miRNA: 3'- uCCAGCuuCG-----ACCuGCUGaGCGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 10194 | 0.72 | 0.368794 |
Target: 5'- cGGGUCGAGGUcaacucGGAgGACUggcgGCUGGCc -3' miRNA: 3'- -UCCAGCUUCGa-----CCUgCUGAg---CGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 65580 | 0.72 | 0.377332 |
Target: 5'- cAGGUCcauGCcGGACGugUCGUuguUGGCg -3' miRNA: 3'- -UCCAGcuuCGaCCUGCugAGCG---ACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 17808 | 0.72 | 0.386001 |
Target: 5'- uGGUCGAGGC-GGGCaaGCU-GCUGGCc -3' miRNA: 3'- uCCAGCUUCGaCCUGc-UGAgCGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 68498 | 0.71 | 0.403729 |
Target: 5'- uGGUgCGAcucugcagAGCUGGACGACUgcCGCUG-Ca -3' miRNA: 3'- uCCA-GCU--------UCGACCUGCUGA--GCGACcG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 8053 | 0.71 | 0.412784 |
Target: 5'- -aGUCGGAGCUGGACaaGGCguaugCGCUgcauccGGCg -3' miRNA: 3'- ucCAGCUUCGACCUG--CUGa----GCGA------CCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 9315 | 0.71 | 0.450222 |
Target: 5'- cGGaaGAacGGCUGGAaggucggaaccCGACUCGCcGGCg -3' miRNA: 3'- uCCagCU--UCGACCU-----------GCUGAGCGaCCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 32387 | 0.71 | 0.450222 |
Target: 5'- aGGGcaucaUCGAcacggugcucccGGCUGG-CGGCUCgaaGCUGGCg -3' miRNA: 3'- -UCC-----AGCU------------UCGACCuGCUGAG---CGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 18471 | 0.7 | 0.469627 |
Target: 5'- -----uGAGCUGGAUGGCcCGCUGGUg -3' miRNA: 3'- uccagcUUCGACCUGCUGaGCGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 32146 | 0.7 | 0.509657 |
Target: 5'- aAGGUUcaGggGCUGGAUGAa-CGC-GGCc -3' miRNA: 3'- -UCCAG--CuuCGACCUGCUgaGCGaCCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 27288 | 0.7 | 0.509657 |
Target: 5'- uGGUagaCGucGCUGGAccCGACgaUUGCUGGCu -3' miRNA: 3'- uCCA---GCuuCGACCU--GCUG--AGCGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 27789 | 0.69 | 0.519891 |
Target: 5'- gAGGgcgaGGAGCUuaagcGGuacguCGACUCGCUGGa -3' miRNA: 3'- -UCCag--CUUCGA-----CCu----GCUGAGCGACCg -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 38749 | 0.69 | 0.551047 |
Target: 5'- ---cUGAGGC-GGGCGACcUGCUGGCc -3' miRNA: 3'- uccaGCUUCGaCCUGCUGaGCGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 37938 | 0.69 | 0.555246 |
Target: 5'- uGGUCGGAGCUGGcCGGCaccuacacggugccCGaaGGCg -3' miRNA: 3'- uCCAGCUUCGACCuGCUGa-------------GCgaCCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 8458 | 0.68 | 0.572132 |
Target: 5'- cGGcgCGAAGacgGGuGCGGCcgCGCUGGCc -3' miRNA: 3'- uCCa-GCUUCga-CC-UGCUGa-GCGACCG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 31238 | 0.68 | 0.572132 |
Target: 5'- cAGGUUGAAGUUGGACcGCUC--UGaGCg -3' miRNA: 3'- -UCCAGCUUCGACCUGcUGAGcgAC-CG- -5' |
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19295 | 5' | -56.4 | NC_004685.1 | + | 5709 | 0.68 | 0.572132 |
Target: 5'- cGGGUCGGcgcagagccuguGGC-GGuACGACUUGUgGGCg -3' miRNA: 3'- -UCCAGCU------------UCGaCC-UGCUGAGCGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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