miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19295 5' -56.4 NC_004685.1 + 197 0.67 0.668382
Target:  5'- cGGGUuucggcgcgaCGAGugcgcGCUGGuguGCGGCUUGaCUGGCa -3'
miRNA:   3'- -UCCA----------GCUU-----CGACC---UGCUGAGC-GACCG- -5'
19295 5' -56.4 NC_004685.1 + 2213 0.66 0.721145
Target:  5'- uGGcCGAgcuggAGCUGGAagaCGACgacgaGCUGGUc -3'
miRNA:   3'- uCCaGCU-----UCGACCU---GCUGag---CGACCG- -5'
19295 5' -56.4 NC_004685.1 + 4013 0.67 0.688596
Target:  5'- -aGUCGAcgGGCUGGccuucgcGCGGCUCGgguucgGGCa -3'
miRNA:   3'- ucCAGCU--UCGACC-------UGCUGAGCga----CCG- -5'
19295 5' -56.4 NC_004685.1 + 4747 0.73 0.320402
Target:  5'- uGGUCGgcGCgcucgUGGuCGGCgCGCUGGCc -3'
miRNA:   3'- uCCAGCuuCG-----ACCuGCUGaGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 5528 0.67 0.657691
Target:  5'- gGGGUUcuacGAGCUGGucauCGGCaCGCUGcGCg -3'
miRNA:   3'- -UCCAGc---UUCGACCu---GCUGaGCGAC-CG- -5'
19295 5' -56.4 NC_004685.1 + 5709 0.68 0.572132
Target:  5'- cGGGUCGGcgcagagccuguGGC-GGuACGACUUGUgGGCg -3'
miRNA:   3'- -UCCAGCU------------UCGaCC-UGCUGAGCGaCCG- -5'
19295 5' -56.4 NC_004685.1 + 8053 0.71 0.412784
Target:  5'- -aGUCGGAGCUGGACaaGGCguaugCGCUgcauccGGCg -3'
miRNA:   3'- ucCAGCUUCGACCUG--CUGa----GCGA------CCG- -5'
19295 5' -56.4 NC_004685.1 + 8458 0.68 0.572132
Target:  5'- cGGcgCGAAGacgGGuGCGGCcgCGCUGGCc -3'
miRNA:   3'- uCCa-GCUUCga-CC-UGCUGa-GCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 9315 0.71 0.450222
Target:  5'- cGGaaGAacGGCUGGAaggucggaaccCGACUCGCcGGCg -3'
miRNA:   3'- uCCagCU--UCGACCU-----------GCUGAGCGaCCG- -5'
19295 5' -56.4 NC_004685.1 + 9874 0.74 0.290873
Target:  5'- cGGGcCGGcacacuGCUGGACGACUCGggcGGCg -3'
miRNA:   3'- -UCCaGCUu-----CGACCUGCUGAGCga-CCG- -5'
19295 5' -56.4 NC_004685.1 + 10155 0.68 0.582748
Target:  5'- cGGGa-GAAGCUGG-CGuACgCGUUGGCg -3'
miRNA:   3'- -UCCagCUUCGACCuGC-UGaGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 10194 0.72 0.368794
Target:  5'- cGGGUCGAGGUcaacucGGAgGACUggcgGCUGGCc -3'
miRNA:   3'- -UCCAGCUUCGa-----CCUgCUGAg---CGACCG- -5'
19295 5' -56.4 NC_004685.1 + 10652 0.67 0.668382
Target:  5'- aGGGUgaGggGCUGGAucgucgcguCGugUgGCggGGCg -3'
miRNA:   3'- -UCCAg-CuuCGACCU---------GCugAgCGa-CCG- -5'
19295 5' -56.4 NC_004685.1 + 17808 0.72 0.386001
Target:  5'- uGGUCGAGGC-GGGCaaGCU-GCUGGCc -3'
miRNA:   3'- uCCAGCUUCGaCCUGc-UGAgCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 18471 0.7 0.469627
Target:  5'- -----uGAGCUGGAUGGCcCGCUGGUg -3'
miRNA:   3'- uccagcUUCGACCUGCUGaGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 18908 0.66 0.730458
Target:  5'- uGGcCGAcgcgcgccgcgacGGCgcGGGCGAgaUGCUGGCg -3'
miRNA:   3'- uCCaGCU-------------UCGa-CCUGCUgaGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 19845 0.66 0.741736
Target:  5'- ---aUGAcGgUGGGCGGCUCGUcGGCa -3'
miRNA:   3'- uccaGCUuCgACCUGCUGAGCGaCCG- -5'
19295 5' -56.4 NC_004685.1 + 20416 0.67 0.679039
Target:  5'- ----aGAucGCagGGACGAuCUCGCUGGCc -3'
miRNA:   3'- uccagCUu-CGa-CCUGCU-GAGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 22399 0.66 0.741736
Target:  5'- gAGGaCGAGGCcgcGGACuGGCg-GUUGGCg -3'
miRNA:   3'- -UCCaGCUUCGa--CCUG-CUGagCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 23244 0.68 0.593404
Target:  5'- cGG-CGAAGCUGGAUGGCcugaucgaGCcGGUg -3'
miRNA:   3'- uCCaGCUUCGACCUGCUGag------CGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.