miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19295 5' -56.4 NC_004685.1 + 19845 0.66 0.741736
Target:  5'- ---aUGAcGgUGGGCGGCUCGUcGGCa -3'
miRNA:   3'- uccaGCUuCgACCUGCUGAGCGaCCG- -5'
19295 5' -56.4 NC_004685.1 + 10155 0.68 0.582748
Target:  5'- cGGGa-GAAGCUGG-CGuACgCGUUGGCg -3'
miRNA:   3'- -UCCagCUUCGACCuGC-UGaGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 23244 0.68 0.593404
Target:  5'- cGG-CGAAGCUGGAUGGCcugaucgaGCcGGUg -3'
miRNA:   3'- uCCaGCUUCGACCUGCUGag------CGaCCG- -5'
19295 5' -56.4 NC_004685.1 + 10652 0.67 0.668382
Target:  5'- aGGGUgaGggGCUGGAucgucgcguCGugUgGCggGGCg -3'
miRNA:   3'- -UCCAg-CuuCGACCU---------GCugAgCGa-CCG- -5'
19295 5' -56.4 NC_004685.1 + 20416 0.67 0.679039
Target:  5'- ----aGAucGCagGGACGAuCUCGCUGGCc -3'
miRNA:   3'- uccagCUu-CGa-CCUGCU-GAGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 4013 0.67 0.688596
Target:  5'- -aGUCGAcgGGCUGGccuucgcGCGGCUCGgguucgGGCa -3'
miRNA:   3'- ucCAGCU--UCGACC-------UGCUGAGCga----CCG- -5'
19295 5' -56.4 NC_004685.1 + 18908 0.66 0.730458
Target:  5'- uGGcCGAcgcgcgccgcgacGGCgcGGGCGAgaUGCUGGCg -3'
miRNA:   3'- uCCaGCU-------------UCGa-CCUGCUgaGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 44359 0.66 0.731488
Target:  5'- cGGggaGAAGCUGGGCa--UCcCUGGCu -3'
miRNA:   3'- uCCag-CUUCGACCUGcugAGcGACCG- -5'
19295 5' -56.4 NC_004685.1 + 40459 0.66 0.741736
Target:  5'- ---gCGggGCUGGACGcCgaacCUGGCg -3'
miRNA:   3'- uccaGCuuCGACCUGCuGagc-GACCG- -5'
19295 5' -56.4 NC_004685.1 + 8458 0.68 0.572132
Target:  5'- cGGcgCGAAGacgGGuGCGGCcgCGCUGGCc -3'
miRNA:   3'- uCCa-GCUUCga-CC-UGCUGa-GCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 47105 0.68 0.572132
Target:  5'- uGGUCaccguGCUGGGCgGugUgGUUGGCg -3'
miRNA:   3'- uCCAGcuu--CGACCUG-CugAgCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 37938 0.69 0.555246
Target:  5'- uGGUCGGAGCUGGcCGGCaccuacacggugccCGaaGGCg -3'
miRNA:   3'- uCCAGCUUCGACCuGCUGa-------------GCgaCCG- -5'
19295 5' -56.4 NC_004685.1 + 9874 0.74 0.290873
Target:  5'- cGGGcCGGcacacuGCUGGACGACUCGggcGGCg -3'
miRNA:   3'- -UCCaGCUu-----CGACCUGCUGAGCga-CCG- -5'
19295 5' -56.4 NC_004685.1 + 10194 0.72 0.368794
Target:  5'- cGGGUCGAGGUcaacucGGAgGACUggcgGCUGGCc -3'
miRNA:   3'- -UCCAGCUUCGa-----CCUgCUGAg---CGACCG- -5'
19295 5' -56.4 NC_004685.1 + 65580 0.72 0.377332
Target:  5'- cAGGUCcauGCcGGACGugUCGUuguUGGCg -3'
miRNA:   3'- -UCCAGcuuCGaCCUGCugAGCG---ACCG- -5'
19295 5' -56.4 NC_004685.1 + 8053 0.71 0.412784
Target:  5'- -aGUCGGAGCUGGACaaGGCguaugCGCUgcauccGGCg -3'
miRNA:   3'- ucCAGCUUCGACCUG--CUGa----GCGA------CCG- -5'
19295 5' -56.4 NC_004685.1 + 32387 0.71 0.450222
Target:  5'- aGGGcaucaUCGAcacggugcucccGGCUGG-CGGCUCgaaGCUGGCg -3'
miRNA:   3'- -UCC-----AGCU------------UCGACCuGCUGAG---CGACCG- -5'
19295 5' -56.4 NC_004685.1 + 27288 0.7 0.509657
Target:  5'- uGGUagaCGucGCUGGAccCGACgaUUGCUGGCu -3'
miRNA:   3'- uCCA---GCuuCGACCU--GCUG--AGCGACCG- -5'
19295 5' -56.4 NC_004685.1 + 27789 0.69 0.519891
Target:  5'- gAGGgcgaGGAGCUuaagcGGuacguCGACUCGCUGGa -3'
miRNA:   3'- -UCCag--CUUCGA-----CCu----GCUGAGCGACCg -5'
19295 5' -56.4 NC_004685.1 + 38749 0.69 0.551047
Target:  5'- ---cUGAGGC-GGGCGACcUGCUGGCc -3'
miRNA:   3'- uccaGCUUCGaCCUGCUGaGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.