miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19298 5' -58.1 NC_004685.1 + 52791 1.11 0.000627
Target:  5'- uCGGCGAGGAUGCGCGUCGACUCACCCu -3'
miRNA:   3'- -GCCGCUCCUACGCGCAGCUGAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 27791 0.79 0.128052
Target:  5'- gGGCGAGGAgcuuaaGCGguaCGUCGACUCGCUg -3'
miRNA:   3'- gCCGCUCCUa-----CGC---GCAGCUGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 21314 0.77 0.162301
Target:  5'- gCGGCGAGGcgAUGCGCuUCG--UCACCCg -3'
miRNA:   3'- -GCCGCUCC--UACGCGcAGCugAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 58776 0.77 0.170958
Target:  5'- aGGUGAGGAUggcaccgaGCGCGUCGGCcgaCACgCCa -3'
miRNA:   3'- gCCGCUCCUA--------CGCGCAGCUGa--GUG-GG- -5'
19298 5' -58.1 NC_004685.1 + 69078 0.75 0.209826
Target:  5'- cCGGCuacGGGUGCGCGcCGcGCUCACCg -3'
miRNA:   3'- -GCCGcu-CCUACGCGCaGC-UGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 61845 0.75 0.213568
Target:  5'- aGGCucGGGUGCGCaGUCGGCUguagcagcggaccgCACCCc -3'
miRNA:   3'- gCCGcuCCUACGCG-CAGCUGA--------------GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 50911 0.74 0.237822
Target:  5'- uCGGCGGucaGAUGCGCGccaCGGC-CACCCg -3'
miRNA:   3'- -GCCGCUc--CUACGCGCa--GCUGaGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 54039 0.74 0.249868
Target:  5'- uGuGCGGGGAUGcCGCGggcgaUGGCUCGCCg -3'
miRNA:   3'- gC-CGCUCCUAC-GCGCa----GCUGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 19871 0.73 0.275466
Target:  5'- aGGUGcGG-UGCGUGUUuACUCGCCCg -3'
miRNA:   3'- gCCGCuCCuACGCGCAGcUGAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 25903 0.73 0.302403
Target:  5'- gCGGUGAGGucguCGaCGUCGACUCggcggguGCCCg -3'
miRNA:   3'- -GCCGCUCCuac-GC-GCAGCUGAG-------UGGG- -5'
19298 5' -58.1 NC_004685.1 + 63017 0.73 0.303119
Target:  5'- cCGGCGuGGgcGCgGUGUCGACcCACaCCa -3'
miRNA:   3'- -GCCGCuCCuaCG-CGCAGCUGaGUG-GG- -5'
19298 5' -58.1 NC_004685.1 + 62260 0.72 0.323718
Target:  5'- gGGCGGGGAgugauacgcgcgGCGCGcUGGCcugCGCCCu -3'
miRNA:   3'- gCCGCUCCUa-----------CGCGCaGCUGa--GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 16980 0.72 0.325228
Target:  5'- cCGGCGAGGGUGgGCa--GAC-CugCCg -3'
miRNA:   3'- -GCCGCUCCUACgCGcagCUGaGugGG- -5'
19298 5' -58.1 NC_004685.1 + 53549 0.72 0.347718
Target:  5'- gCGGCGcggccgacuccagGGGAccguggccgUGCGCGUCGGCggugUUGCCCu -3'
miRNA:   3'- -GCCGC-------------UCCU---------ACGCGCAGCUG----AGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 24327 0.71 0.372964
Target:  5'- aGGCGGGuucgGCGaCGUCGACUC-CCg -3'
miRNA:   3'- gCCGCUCcua-CGC-GCAGCUGAGuGGg -5'
19298 5' -58.1 NC_004685.1 + 20436 0.71 0.3899
Target:  5'- gGGCGAGGuGUGCGCGcUGAUggCGCUg -3'
miRNA:   3'- gCCGCUCC-UACGCGCaGCUGa-GUGGg -5'
19298 5' -58.1 NC_004685.1 + 13852 0.7 0.416227
Target:  5'- gCGGCGAGcuGAUGCaCGUCGAC---CCCa -3'
miRNA:   3'- -GCCGCUC--CUACGcGCAGCUGaguGGG- -5'
19298 5' -58.1 NC_004685.1 + 4215 0.7 0.434372
Target:  5'- gCGGCGAGGA-GUGCGaCGACagUCAgCa -3'
miRNA:   3'- -GCCGCUCCUaCGCGCaGCUG--AGUgGg -5'
19298 5' -58.1 NC_004685.1 + 5101 0.7 0.434372
Target:  5'- aGGcCGAGGAgucUGC-UCGACUCGCCa -3'
miRNA:   3'- gCC-GCUCCUac-GCGcAGCUGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 13101 0.69 0.462425
Target:  5'- aGGgGAuGAUGCGCGUCcgagaugagauGAUgcgCGCCCg -3'
miRNA:   3'- gCCgCUcCUACGCGCAG-----------CUGa--GUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.