miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19298 5' -58.1 NC_004685.1 + 59583 0.67 0.582642
Target:  5'- gCGGCGGcGGGUGaGCGcacCGGCUgCGCCUu -3'
miRNA:   3'- -GCCGCU-CCUACgCGCa--GCUGA-GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 37512 0.68 0.531278
Target:  5'- uGGCGAGGugugGCGCGcuguggUGGCcgcguUCAUCCa -3'
miRNA:   3'- gCCGCUCCua--CGCGCa-----GCUG-----AGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 38976 0.68 0.541436
Target:  5'- uCGGCGAcGGcgGCGCGUaccgCGAC---CCCg -3'
miRNA:   3'- -GCCGCU-CCuaCGCGCA----GCUGaguGGG- -5'
19298 5' -58.1 NC_004685.1 + 43237 0.68 0.541436
Target:  5'- --cCGAGGccaagGCGCG-CGGCUaCACCCg -3'
miRNA:   3'- gccGCUCCua---CGCGCaGCUGA-GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 27664 0.68 0.545517
Target:  5'- uGGCGAGGucgcacgccuaaaGCGCGUCGAgcugUUCACa- -3'
miRNA:   3'- gCCGCUCCua-----------CGCGCAGCU----GAGUGgg -5'
19298 5' -58.1 NC_004685.1 + 11177 0.68 0.561936
Target:  5'- aGGcCGcAGGAUGagGCGUCGACcuUCGCUUu -3'
miRNA:   3'- gCC-GC-UCCUACg-CGCAGCUG--AGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 10114 0.68 0.561936
Target:  5'- gCGGCGAcGAgaacGCGC-UCGACgggcaCGCCCu -3'
miRNA:   3'- -GCCGCUcCUa---CGCGcAGCUGa----GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 30115 0.67 0.572267
Target:  5'- cCGGUGGGGGcagUGuCGCGgcCGcACUCgGCCCg -3'
miRNA:   3'- -GCCGCUCCU---AC-GCGCa-GC-UGAG-UGGG- -5'
19298 5' -58.1 NC_004685.1 + 16886 0.67 0.582642
Target:  5'- uCGGCaAGGGUGa--GUCGACgcgCAUCCu -3'
miRNA:   3'- -GCCGcUCCUACgcgCAGCUGa--GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 37889 0.69 0.491402
Target:  5'- uCGGCGAGacgGU-CGUCGugUCGCUCg -3'
miRNA:   3'- -GCCGCUCcuaCGcGCAGCugAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 8669 0.69 0.481646
Target:  5'- gCGGUGuGcugGC-CGUCGAUUCACCCc -3'
miRNA:   3'- -GCCGCuCcuaCGcGCAGCUGAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 26570 0.69 0.469107
Target:  5'- gGGCGAGGAgaacuaugcgaagcUGCGCGcCGGCggcaagucggCGgCCg -3'
miRNA:   3'- gCCGCUCCU--------------ACGCGCaGCUGa---------GUgGG- -5'
19298 5' -58.1 NC_004685.1 + 58776 0.77 0.170958
Target:  5'- aGGUGAGGAUggcaccgaGCGCGUCGGCcgaCACgCCa -3'
miRNA:   3'- gCCGCUCCUA--------CGCGCAGCUGa--GUG-GG- -5'
19298 5' -58.1 NC_004685.1 + 61845 0.75 0.213568
Target:  5'- aGGCucGGGUGCGCaGUCGGCUguagcagcggaccgCACCCc -3'
miRNA:   3'- gCCGcuCCUACGCG-CAGCUGA--------------GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 54039 0.74 0.249868
Target:  5'- uGuGCGGGGAUGcCGCGggcgaUGGCUCGCCg -3'
miRNA:   3'- gC-CGCUCCUAC-GCGCa----GCUGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 25903 0.73 0.302403
Target:  5'- gCGGUGAGGucguCGaCGUCGACUCggcggguGCCCg -3'
miRNA:   3'- -GCCGCUCCuac-GC-GCAGCUGAG-------UGGG- -5'
19298 5' -58.1 NC_004685.1 + 63017 0.73 0.303119
Target:  5'- cCGGCGuGGgcGCgGUGUCGACcCACaCCa -3'
miRNA:   3'- -GCCGCuCCuaCG-CGCAGCUGaGUG-GG- -5'
19298 5' -58.1 NC_004685.1 + 24327 0.71 0.372964
Target:  5'- aGGCGGGuucgGCGaCGUCGACUC-CCg -3'
miRNA:   3'- gCCGCUCcua-CGC-GCAGCUGAGuGGg -5'
19298 5' -58.1 NC_004685.1 + 5101 0.7 0.434372
Target:  5'- aGGcCGAGGAgucUGC-UCGACUCGCCa -3'
miRNA:   3'- gCC-GCUCCUac-GCGcAGCUGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 13101 0.69 0.462425
Target:  5'- aGGgGAuGAUGCGCGUCcgagaugagauGAUgcgCGCCCg -3'
miRNA:   3'- gCCgCUcCUACGCGCAG-----------CUGa--GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.