miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19298 5' -58.1 NC_004685.1 + 155 0.69 0.471986
Target:  5'- uGGcCGGGGA-GCuGC-UCGGCUUGCCCu -3'
miRNA:   3'- gCC-GCUCCUaCG-CGcAGCUGAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 365 0.67 0.603496
Target:  5'- gCGGCGAGcGGUcaccaGCGCaUCGACagcCGCCUc -3'
miRNA:   3'- -GCCGCUC-CUA-----CGCGcAGCUGa--GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 1509 0.68 0.519182
Target:  5'- gCGGCG-GGAucugacgUGCGCGUaugcguuccucuuUGACUUugCCc -3'
miRNA:   3'- -GCCGCuCCU-------ACGCGCA-------------GCUGAGugGG- -5'
19298 5' -58.1 NC_004685.1 + 1875 0.66 0.634925
Target:  5'- aGGuUGAGGAUG-GCGUCGGuCagGCCg -3'
miRNA:   3'- gCC-GCUCCUACgCGCAGCU-GagUGGg -5'
19298 5' -58.1 NC_004685.1 + 4215 0.7 0.434372
Target:  5'- gCGGCGAGGA-GUGCGaCGACagUCAgCa -3'
miRNA:   3'- -GCCGCUCCUaCGCGCaGCUG--AGUgGg -5'
19298 5' -58.1 NC_004685.1 + 5101 0.7 0.434372
Target:  5'- aGGcCGAGGAgucUGC-UCGACUCGCCa -3'
miRNA:   3'- gCC-GCUCCUac-GCGcAGCUGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 6262 0.66 0.65588
Target:  5'- uGGaCGAGGcgugcaucgagGUGCGCGacaaGCUCAUCCa -3'
miRNA:   3'- gCC-GCUCC-----------UACGCGCagc-UGAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 6654 0.68 0.561936
Target:  5'- aGGCcGGucuGGUGUGgGUCGACaccgCGCCCa -3'
miRNA:   3'- gCCGcUC---CUACGCgCAGCUGa---GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 7552 0.66 0.666332
Target:  5'- --aCGAGGGUGaGCGUUGGaUCGCCUa -3'
miRNA:   3'- gccGCUCCUACgCGCAGCUgAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 8669 0.69 0.481646
Target:  5'- gCGGUGuGcugGC-CGUCGAUUCACCCc -3'
miRNA:   3'- -GCCGCuCcuaCGcGCAGCUGAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 9550 0.66 0.676754
Target:  5'- gCGGCGAuGGccacgGCGCG-CGACcugaUC-CCCa -3'
miRNA:   3'- -GCCGCU-CCua---CGCGCaGCUG----AGuGGG- -5'
19298 5' -58.1 NC_004685.1 + 10114 0.68 0.561936
Target:  5'- gCGGCGAcGAgaacGCGC-UCGACgggcaCGCCCu -3'
miRNA:   3'- -GCCGCUcCUa---CGCGcAGCUGa----GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 10281 0.68 0.519182
Target:  5'- uCGGCGAGauucuguccgGCGCgGUCGACgugCuGCCCg -3'
miRNA:   3'- -GCCGCUCcua-------CGCG-CAGCUGa--G-UGGG- -5'
19298 5' -58.1 NC_004685.1 + 10773 0.66 0.69128
Target:  5'- uCGGCGAgucGGAgucgaggcUGCGCGgcaucuucuccaagaUCGACgCGCUCg -3'
miRNA:   3'- -GCCGCU---CCU--------ACGCGC---------------AGCUGaGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 11177 0.68 0.561936
Target:  5'- aGGcCGcAGGAUGagGCGUCGACcuUCGCUUu -3'
miRNA:   3'- gCC-GC-UCCUACg-CGCAGCUG--AGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 13101 0.69 0.462425
Target:  5'- aGGgGAuGAUGCGCGUCcgagaugagauGAUgcgCGCCCg -3'
miRNA:   3'- gCCgCUcCUACGCGCAG-----------CUGa--GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 13852 0.7 0.416227
Target:  5'- gCGGCGAGcuGAUGCaCGUCGAC---CCCa -3'
miRNA:   3'- -GCCGCUC--CUACGcGCAGCUGaguGGG- -5'
19298 5' -58.1 NC_004685.1 + 14014 0.66 0.666332
Target:  5'- cCGGCGAcGAgGCG-GUCGAgUUCGCCa -3'
miRNA:   3'- -GCCGCUcCUaCGCgCAGCU-GAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 16239 0.69 0.491402
Target:  5'- gCGGCGAGGuaGUGCcgacCGcCGACaUCGCCa -3'
miRNA:   3'- -GCCGCUCC--UACGc---GCaGCUG-AGUGGg -5'
19298 5' -58.1 NC_004685.1 + 16550 0.67 0.603496
Target:  5'- gCGGUGAuGGcgGCGC-UCGAC-CGCUg -3'
miRNA:   3'- -GCCGCU-CCuaCGCGcAGCUGaGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.