miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19300 3' -59.6 NC_004685.1 + 8405 0.66 0.576975
Target:  5'- cGUgGGACGaggCGUUUgaGAUGGCCCGcGUa -3'
miRNA:   3'- -CAgCCUGCg--GUAGAg-CUACCGGGC-CA- -5'
19300 3' -59.6 NC_004685.1 + 8556 0.66 0.576975
Target:  5'- uGUCGGgucuGCGCCuGUUUCGGgugccGCCCGGc -3'
miRNA:   3'- -CAGCC----UGCGG-UAGAGCUac---CGGGCCa -5'
19300 3' -59.6 NC_004685.1 + 31233 0.66 0.576975
Target:  5'- --aGGGCGUCggCUCG--GGCCUGGUc -3'
miRNA:   3'- cagCCUGCGGuaGAGCuaCCGGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 3964 0.66 0.572821
Target:  5'- cUCGGGCGCgGUCcagaaguccgCGGgcagacgacagccGGCCCGGUg -3'
miRNA:   3'- cAGCCUGCGgUAGa---------GCUa------------CCGGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 2439 0.66 0.566602
Target:  5'- -cCGGugGCCugUUCGAcGGCgCGGUc -3'
miRNA:   3'- caGCCugCGGuaGAGCUaCCGgGCCA- -5'
19300 3' -59.6 NC_004685.1 + 41780 0.66 0.566602
Target:  5'- gGUgGGGuCGCCcaccaUCGAggucGGCCCGGUu -3'
miRNA:   3'- -CAgCCU-GCGGuag--AGCUa---CCGGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 52857 0.66 0.546008
Target:  5'- gGUCGGACa-CGUCgUCGAUGGCCUu-- -3'
miRNA:   3'- -CAGCCUGcgGUAG-AGCUACCGGGcca -5'
19300 3' -59.6 NC_004685.1 + 3174 0.66 0.546008
Target:  5'- uUCGGucagcgcCGCCAUgUCGAUGGUgccgUCGGg -3'
miRNA:   3'- cAGCCu------GCGGUAgAGCUACCG----GGCCa -5'
19300 3' -59.6 NC_004685.1 + 29829 0.66 0.546008
Target:  5'- cUUGGACGCCAccagcgCgUCGAUGGCCgCcGUg -3'
miRNA:   3'- cAGCCUGCGGUa-----G-AGCUACCGG-GcCA- -5'
19300 3' -59.6 NC_004685.1 + 27862 0.66 0.535801
Target:  5'- -aCGGAgGUCGaCUCGAUGcGCaCCGGc -3'
miRNA:   3'- caGCCUgCGGUaGAGCUAC-CG-GGCCa -5'
19300 3' -59.6 NC_004685.1 + 38550 0.66 0.52566
Target:  5'- aUCGG-CGCUAUCUCGuggaucGGCUgGGg -3'
miRNA:   3'- cAGCCuGCGGUAGAGCua----CCGGgCCa -5'
19300 3' -59.6 NC_004685.1 + 21258 0.67 0.515593
Target:  5'- cUCGGccagcaguACGCCAUCgagacCGA-GGCCCuGGUg -3'
miRNA:   3'- cAGCC--------UGCGGUAGa----GCUaCCGGG-CCA- -5'
19300 3' -59.6 NC_004685.1 + 10707 0.67 0.515593
Target:  5'- cGUUGGGCGCCGagUgGAacUGG-CCGGUg -3'
miRNA:   3'- -CAGCCUGCGGUagAgCU--ACCgGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 10174 0.67 0.515593
Target:  5'- cGUUGG-CGUuc-CUCGAUGGCCgGGUc -3'
miRNA:   3'- -CAGCCuGCGguaGAGCUACCGGgCCA- -5'
19300 3' -59.6 NC_004685.1 + 21561 0.67 0.515593
Target:  5'- -cCGGugGUCAUgUCGgcGGCgCUGGg -3'
miRNA:   3'- caGCCugCGGUAgAGCuaCCG-GGCCa -5'
19300 3' -59.6 NC_004685.1 + 37546 0.67 0.505605
Target:  5'- cGUCGGcACGCCcagcgGUgUCGGUGcgccaCCCGGUg -3'
miRNA:   3'- -CAGCC-UGCGG-----UAgAGCUACc----GGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 9530 0.67 0.485885
Target:  5'- aGUCGGGCGgCGgcaagggugCggCGAUGGCCaCGGc -3'
miRNA:   3'- -CAGCCUGCgGUa--------Ga-GCUACCGG-GCCa -5'
19300 3' -59.6 NC_004685.1 + 33189 0.67 0.485885
Target:  5'- -gUGGGCGCCGgugCGGUGGacgcgcaaCCCGGUc -3'
miRNA:   3'- caGCCUGCGGUagaGCUACC--------GGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 44577 0.67 0.476163
Target:  5'- -aCGGugGCCGUCacCGAgaugcaGGgCCGGUa -3'
miRNA:   3'- caGCCugCGGUAGa-GCUa-----CCgGGCCA- -5'
19300 3' -59.6 NC_004685.1 + 1136 0.67 0.476163
Target:  5'- aUCgGGGCGCCcgCaUCGGacUGGCCgGGg -3'
miRNA:   3'- cAG-CCUGCGGuaG-AGCU--ACCGGgCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.