miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19301 3' -56.1 NC_004685.1 + 50929 1.1 0.001121
Target:  5'- cCACGGCCACCCGACAGGUGAUACAGGu -3'
miRNA:   3'- -GUGCCGGUGGGCUGUCCACUAUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 54563 0.79 0.157355
Target:  5'- gCACGGCCAUCCGACGcGUGAUcgaGCAGc -3'
miRNA:   3'- -GUGCCGGUGGGCUGUcCACUA---UGUCc -5'
19301 3' -56.1 NC_004685.1 + 14091 0.78 0.174954
Target:  5'- aCACGGCgACCCGGCuGGUGcaGCAGa -3'
miRNA:   3'- -GUGCCGgUGGGCUGuCCACuaUGUCc -5'
19301 3' -56.1 NC_004685.1 + 18025 0.77 0.204636
Target:  5'- gCGCGGCCAacaugcugCCGcGCGcGGUGAUGCAGGg -3'
miRNA:   3'- -GUGCCGGUg-------GGC-UGU-CCACUAUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 8415 0.77 0.209988
Target:  5'- uGCGGCUGCCCGACGGuGUGGU-CGGc -3'
miRNA:   3'- gUGCCGGUGGGCUGUC-CACUAuGUCc -5'
19301 3' -56.1 NC_004685.1 + 56462 0.76 0.238583
Target:  5'- cCACGGcCCACCCGACAcccacUGAUACAGu -3'
miRNA:   3'- -GUGCC-GGUGGGCUGUcc---ACUAUGUCc -5'
19301 3' -56.1 NC_004685.1 + 9801 0.76 0.250904
Target:  5'- cCGCGGCCGCCgCGGCgAGGUGGUcCcGGc -3'
miRNA:   3'- -GUGCCGGUGG-GCUG-UCCACUAuGuCC- -5'
19301 3' -56.1 NC_004685.1 + 34114 0.73 0.335982
Target:  5'- -uCGGCC-CCCuggagcgcgGGCAGGUGGUGCAGc -3'
miRNA:   3'- guGCCGGuGGG---------CUGUCCACUAUGUCc -5'
19301 3' -56.1 NC_004685.1 + 32255 0.73 0.352056
Target:  5'- aCGCGGCCGCgUCGGCcgccGGUGGcGCGGGc -3'
miRNA:   3'- -GUGCCGGUG-GGCUGu---CCACUaUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 26847 0.72 0.421632
Target:  5'- gACGGCCGCCCG-C-GGUGGggAguGGa -3'
miRNA:   3'- gUGCCGGUGGGCuGuCCACUa-UguCC- -5'
19301 3' -56.1 NC_004685.1 + 23947 0.7 0.488845
Target:  5'- uCGCGGCCACCCccagccCAGGUGuu-CAGc -3'
miRNA:   3'- -GUGCCGGUGGGcu----GUCCACuauGUCc -5'
19301 3' -56.1 NC_004685.1 + 66400 0.7 0.488845
Target:  5'- aCACGGCgGCCCGACGGcac---CAGGa -3'
miRNA:   3'- -GUGCCGgUGGGCUGUCcacuauGUCC- -5'
19301 3' -56.1 NC_004685.1 + 62536 0.69 0.550191
Target:  5'- gAUGGCCACCCcgccgaACAcGUGGUGCAGc -3'
miRNA:   3'- gUGCCGGUGGGc-----UGUcCACUAUGUCc -5'
19301 3' -56.1 NC_004685.1 + 33828 0.69 0.560665
Target:  5'- gCGCuGGCCgucgcguggaacACCuCGAUgccaGGGUGAUACGGGc -3'
miRNA:   3'- -GUG-CCGG------------UGG-GCUG----UCCACUAUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 35746 0.69 0.560665
Target:  5'- aGCGGCgCACCgUGGCGGGUG--GCAGc -3'
miRNA:   3'- gUGCCG-GUGG-GCUGUCCACuaUGUCc -5'
19301 3' -56.1 NC_004685.1 + 2874 0.69 0.571193
Target:  5'- cCGCgGGCUgcuacgGCCCGACGGGUGAccuggugACGGu -3'
miRNA:   3'- -GUG-CCGG------UGGGCUGUCCACUa------UGUCc -5'
19301 3' -56.1 NC_004685.1 + 14143 0.69 0.571193
Target:  5'- gCugGGCgaGCCCGAcCGGGUGA---AGGg -3'
miRNA:   3'- -GugCCGg-UGGGCU-GUCCACUaugUCC- -5'
19301 3' -56.1 NC_004685.1 + 45213 0.69 0.581768
Target:  5'- cCGCGGCCGa--GcCGGGUGAUucgcaGCAGGa -3'
miRNA:   3'- -GUGCCGGUgggCuGUCCACUA-----UGUCC- -5'
19301 3' -56.1 NC_004685.1 + 31854 0.69 0.581768
Target:  5'- -uCGGCCACCUGAagcuggauGGGUGcgGCGGu -3'
miRNA:   3'- guGCCGGUGGGCUg-------UCCACuaUGUCc -5'
19301 3' -56.1 NC_004685.1 + 43199 0.68 0.603029
Target:  5'- gGCGGCCACCaaaGAcCAGGUugcGCAGa -3'
miRNA:   3'- gUGCCGGUGGg--CU-GUCCAcuaUGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.