Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19301 | 3' | -56.1 | NC_004685.1 | + | 15715 | 0.68 | 0.656441 |
Target: 5'- cCugGGCCAcCCCGAguUGGGgcucGGcGCAGGa -3' miRNA: 3'- -GugCCGGU-GGGCU--GUCCa---CUaUGUCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 43199 | 0.68 | 0.603029 |
Target: 5'- gGCGGCCACCaaaGAcCAGGUugcGCAGa -3' miRNA: 3'- gUGCCGGUGGg--CU-GUCCAcuaUGUCc -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 46604 | 0.68 | 0.624384 |
Target: 5'- gGCGGUCACCCuGuuuCAGGUGAUcgucuaccuucACAuGGc -3' miRNA: 3'- gUGCCGGUGGG-Cu--GUCCACUA-----------UGU-CC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 32907 | 0.68 | 0.631868 |
Target: 5'- gCAUGGCgguGCCCGACAaGGUGAacuccccgagagugUGCAGc -3' miRNA: 3'- -GUGCCGg--UGGGCUGU-CCACU--------------AUGUCc -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 19044 | 0.68 | 0.635075 |
Target: 5'- gAgGGCCACUCGcACuGcGUGGUGCuGGa -3' miRNA: 3'- gUgCCGGUGGGC-UGuC-CACUAUGuCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 2902 | 0.68 | 0.645764 |
Target: 5'- -uCGGgCACCCGGCcccagugccGGUGcgGCGGGc -3' miRNA: 3'- guGCCgGUGGGCUGu--------CCACuaUGUCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 44951 | 0.68 | 0.645764 |
Target: 5'- gGCGGCUACUCG-CAGG--GUGCAGu -3' miRNA: 3'- gUGCCGGUGGGCuGUCCacUAUGUCc -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 51375 | 0.68 | 0.655374 |
Target: 5'- aCAgGGCCACcugcaCCGGCGGGUccuucggGAU-CAGGu -3' miRNA: 3'- -GUgCCGGUG-----GGCUGUCCA-------CUAuGUCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 45136 | 0.68 | 0.656441 |
Target: 5'- gCAgGGCguCUcguCGACGGG-GAUGCGGGa -3' miRNA: 3'- -GUgCCGguGG---GCUGUCCaCUAUGUCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 933 | 0.68 | 0.603029 |
Target: 5'- gUACaGGCCGCaguCCuGCGGGcgGAUGCGGGg -3' miRNA: 3'- -GUG-CCGGUG---GGcUGUCCa-CUAUGUCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 45213 | 0.69 | 0.581768 |
Target: 5'- cCGCGGCCGa--GcCGGGUGAUucgcaGCAGGa -3' miRNA: 3'- -GUGCCGGUgggCuGUCCACUA-----UGUCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 62536 | 0.69 | 0.550191 |
Target: 5'- gAUGGCCACCCcgccgaACAcGUGGUGCAGc -3' miRNA: 3'- gUGCCGGUGGGc-----UGUcCACUAUGUCc -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 18025 | 0.77 | 0.204636 |
Target: 5'- gCGCGGCCAacaugcugCCGcGCGcGGUGAUGCAGGg -3' miRNA: 3'- -GUGCCGGUg-------GGC-UGU-CCACUAUGUCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 8415 | 0.77 | 0.209988 |
Target: 5'- uGCGGCUGCCCGACGGuGUGGU-CGGc -3' miRNA: 3'- gUGCCGGUGGGCUGUC-CACUAuGUCc -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 56462 | 0.76 | 0.238583 |
Target: 5'- cCACGGcCCACCCGACAcccacUGAUACAGu -3' miRNA: 3'- -GUGCC-GGUGGGCUGUcc---ACUAUGUCc -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 9801 | 0.76 | 0.250904 |
Target: 5'- cCGCGGCCGCCgCGGCgAGGUGGUcCcGGc -3' miRNA: 3'- -GUGCCGGUGG-GCUG-UCCACUAuGuCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 34114 | 0.73 | 0.335982 |
Target: 5'- -uCGGCC-CCCuggagcgcgGGCAGGUGGUGCAGc -3' miRNA: 3'- guGCCGGuGGG---------CUGUCCACUAUGUCc -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 32255 | 0.73 | 0.352056 |
Target: 5'- aCGCGGCCGCgUCGGCcgccGGUGGcGCGGGc -3' miRNA: 3'- -GUGCCGGUG-GGCUGu---CCACUaUGUCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 26847 | 0.72 | 0.421632 |
Target: 5'- gACGGCCGCCCG-C-GGUGGggAguGGa -3' miRNA: 3'- gUGCCGGUGGGCuGuCCACUa-UguCC- -5' |
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19301 | 3' | -56.1 | NC_004685.1 | + | 66400 | 0.7 | 0.488845 |
Target: 5'- aCACGGCgGCCCGACGGcac---CAGGa -3' miRNA: 3'- -GUGCCGgUGGGCUGUCcacuauGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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