miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19301 3' -56.1 NC_004685.1 + 933 0.68 0.603029
Target:  5'- gUACaGGCCGCaguCCuGCGGGcgGAUGCGGGg -3'
miRNA:   3'- -GUG-CCGGUG---GGcUGUCCa-CUAUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 1092 0.67 0.688306
Target:  5'- aUugGGCCGgCCGGCuGGUGuu-CGGu -3'
miRNA:   3'- -GugCCGGUgGGCUGuCCACuauGUCc -5'
19301 3' -56.1 NC_004685.1 + 2688 0.65 0.777119
Target:  5'- aCGCGGCCGCugucgccgccaucaCCGGCAccGUGAUgAUGGGg -3'
miRNA:   3'- -GUGCCGGUG--------------GGCUGUc-CACUA-UGUCC- -5'
19301 3' -56.1 NC_004685.1 + 2775 0.67 0.719713
Target:  5'- cCGCGG-CGCgCGACGGGcggGGUAguGGu -3'
miRNA:   3'- -GUGCCgGUGgGCUGUCCa--CUAUguCC- -5'
19301 3' -56.1 NC_004685.1 + 2874 0.69 0.571193
Target:  5'- cCGCgGGCUgcuacgGCCCGACGGGUGAccuggugACGGu -3'
miRNA:   3'- -GUG-CCGG------UGGGCUGUCCACUa------UGUCc -5'
19301 3' -56.1 NC_004685.1 + 2902 0.68 0.645764
Target:  5'- -uCGGgCACCCGGCcccagugccGGUGcgGCGGGc -3'
miRNA:   3'- guGCCgGUGGGCUGu--------CCACuaUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 3299 0.66 0.770278
Target:  5'- gCAUGGCUacGCCuCGGgGGGU--UGCAGGu -3'
miRNA:   3'- -GUGCCGG--UGG-GCUgUCCAcuAUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 5166 0.67 0.709312
Target:  5'- gACGGCCACgUCGucguCAGGUGGaagccGCAGa -3'
miRNA:   3'- gUGCCGGUG-GGCu---GUCCACUa----UGUCc -5'
19301 3' -56.1 NC_004685.1 + 8415 0.77 0.209988
Target:  5'- uGCGGCUGCCCGACGGuGUGGU-CGGc -3'
miRNA:   3'- gUGCCGGUGGGCUGUC-CACUAuGUCc -5'
19301 3' -56.1 NC_004685.1 + 9801 0.76 0.250904
Target:  5'- cCGCGGCCGCCgCGGCgAGGUGGUcCcGGc -3'
miRNA:   3'- -GUGCCGGUGG-GCUG-UCCACUAuGuCC- -5'
19301 3' -56.1 NC_004685.1 + 10137 0.68 0.603029
Target:  5'- uGCuGCgACCCGACGGGcug-GCAGGc -3'
miRNA:   3'- gUGcCGgUGGGCUGUCCacuaUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 14091 0.78 0.174954
Target:  5'- aCACGGCgACCCGGCuGGUGcaGCAGa -3'
miRNA:   3'- -GUGCCGgUGGGCUGuCCACuaUGUCc -5'
19301 3' -56.1 NC_004685.1 + 14143 0.69 0.571193
Target:  5'- gCugGGCgaGCCCGAcCGGGUGA---AGGg -3'
miRNA:   3'- -GugCCGg-UGGGCU-GUCCACUaugUCC- -5'
19301 3' -56.1 NC_004685.1 + 15136 0.66 0.770278
Target:  5'- gAUGGCCguGCUCaGguGGUGGUGCuGGg -3'
miRNA:   3'- gUGCCGG--UGGGcUguCCACUAUGuCC- -5'
19301 3' -56.1 NC_004685.1 + 15715 0.68 0.656441
Target:  5'- cCugGGCCAcCCCGAguUGGGgcucGGcGCAGGa -3'
miRNA:   3'- -GugCCGGU-GGGCU--GUCCa---CUaUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 17676 0.66 0.730032
Target:  5'- cCGgGGCCGcCCCGGCGucGGcacUGAU-CAGGg -3'
miRNA:   3'- -GUgCCGGU-GGGCUGU--CC---ACUAuGUCC- -5'
19301 3' -56.1 NC_004685.1 + 18025 0.77 0.204636
Target:  5'- gCGCGGCCAacaugcugCCGcGCGcGGUGAUGCAGGg -3'
miRNA:   3'- -GUGCCGGUg-------GGC-UGU-CCACUAUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 18716 0.67 0.69884
Target:  5'- gCugGGCCaACCCGcUGGGUGGa--GGGa -3'
miRNA:   3'- -GugCCGG-UGGGCuGUCCACUaugUCC- -5'
19301 3' -56.1 NC_004685.1 + 19044 0.68 0.635075
Target:  5'- gAgGGCCACUCGcACuGcGUGGUGCuGGa -3'
miRNA:   3'- gUgCCGGUGGGC-UGuC-CACUAUGuCC- -5'
19301 3' -56.1 NC_004685.1 + 20027 0.67 0.69884
Target:  5'- --gGGCgACCCGcCGGGgcgGAUcaucGCGGGg -3'
miRNA:   3'- gugCCGgUGGGCuGUCCa--CUA----UGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.