miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19306 3' -62 NC_004685.1 + 47864 1.08 0.000252
Target:  5'- uUGGCUGCUGCUCGCAGCCGGGCCAACu -3'
miRNA:   3'- -ACCGACGACGAGCGUCGGCCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 15082 0.77 0.064687
Target:  5'- gGGgaGCUGCUCGguGCCGaGGUCcGCu -3'
miRNA:   3'- aCCgaCGACGAGCguCGGC-CCGGuUG- -5'
19306 3' -62 NC_004685.1 + 52398 0.76 0.072282
Target:  5'- aUGGCccaCUGCUCGaAGCCGuGGCCGACg -3'
miRNA:   3'- -ACCGac-GACGAGCgUCGGC-CCGGUUG- -5'
19306 3' -62 NC_004685.1 + 12628 0.73 0.120234
Target:  5'- gGGCaggaaaucgaccgGCUGCUCGCcGCCGGGCgGGu -3'
miRNA:   3'- aCCGa------------CGACGAGCGuCGGCCCGgUUg -5'
19306 3' -62 NC_004685.1 + 66236 0.73 0.121537
Target:  5'- uUGGCUGCcGCgccgcaacgaUCGCAG-CGGGUCAGCc -3'
miRNA:   3'- -ACCGACGaCG----------AGCGUCgGCCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 59373 0.73 0.124852
Target:  5'- cGGCUGCUcUUCGguGUCGGG-CAGCa -3'
miRNA:   3'- aCCGACGAcGAGCguCGGCCCgGUUG- -5'
19306 3' -62 NC_004685.1 + 57922 0.73 0.134945
Target:  5'- aUGGCUGCgUGCagcuccUCGCGGCgcuccauCGGGCaCAGCg -3'
miRNA:   3'- -ACCGACG-ACG------AGCGUCG-------GCCCG-GUUG- -5'
19306 3' -62 NC_004685.1 + 37135 0.73 0.138967
Target:  5'- -cGCgauCUGCUccggCGUGGCCGGGCCGACg -3'
miRNA:   3'- acCGac-GACGA----GCGUCGGCCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 21781 0.72 0.142717
Target:  5'- cGGUgaGCUGgUCGCAGUCGGGuCCAu- -3'
miRNA:   3'- aCCGa-CGACgAGCGUCGGCCC-GGUug -5'
19306 3' -62 NC_004685.1 + 11366 0.72 0.142717
Target:  5'- aGGCUGUg---C-CGGCCGGGCCGACc -3'
miRNA:   3'- aCCGACGacgaGcGUCGGCCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 49368 0.72 0.142717
Target:  5'- cGGUguaCUGCUCGCAGUCGcaguGCCGACa -3'
miRNA:   3'- aCCGac-GACGAGCGUCGGCc---CGGUUG- -5'
19306 3' -62 NC_004685.1 + 32786 0.72 0.154531
Target:  5'- cGGUguucUGCccgacgUGCcCGCGGCCGcGGCCGACg -3'
miRNA:   3'- aCCG----ACG------ACGaGCGUCGGC-CCGGUUG- -5'
19306 3' -62 NC_004685.1 + 7030 0.72 0.156998
Target:  5'- cGGCUcgGuCUGCUCGCcgcgcugcgcaacGCCaGGGCCGACa -3'
miRNA:   3'- aCCGA--C-GACGAGCGu------------CGG-CCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 21512 0.71 0.185598
Target:  5'- cGG-UGCUGCcCGacgAGCCGGGCCAc- -3'
miRNA:   3'- aCCgACGACGaGCg--UCGGCCCGGUug -5'
19306 3' -62 NC_004685.1 + 48404 0.71 0.185598
Target:  5'- -aGCUGUUGCUgGCAGuuGGGCgGu- -3'
miRNA:   3'- acCGACGACGAgCGUCggCCCGgUug -5'
19306 3' -62 NC_004685.1 + 14167 0.71 0.189971
Target:  5'- gGGCauucagaUGCUGCUCGaC-GCCGGGCUg-- -3'
miRNA:   3'- aCCG-------ACGACGAGC-GuCGGCCCGGuug -5'
19306 3' -62 NC_004685.1 + 20879 0.7 0.200527
Target:  5'- aUGGCUGaCUGCggGCAcgagaagguGCCGGGUgAGCc -3'
miRNA:   3'- -ACCGAC-GACGagCGU---------CGGCCCGgUUG- -5'
19306 3' -62 NC_004685.1 + 62733 0.7 0.216489
Target:  5'- aUGGCUGCggGCUUGacCGGCUcggGGGCCAc- -3'
miRNA:   3'- -ACCGACGa-CGAGC--GUCGG---CCCGGUug -5'
19306 3' -62 NC_004685.1 + 33867 0.7 0.227152
Target:  5'- cGGCUcGCUGCUCGguGaggacuaCCGGGgCAu- -3'
miRNA:   3'- aCCGA-CGACGAGCguC-------GGCCCgGUug -5'
19306 3' -62 NC_004685.1 + 65055 0.69 0.233526
Target:  5'- aGGCgaccauCUCGCGGUCGGGCCAcuGCu -3'
miRNA:   3'- aCCGacgac-GAGCGUCGGCCCGGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.