miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19306 3' -62 NC_004685.1 + 65286 0.67 0.339102
Target:  5'- gUGGCaGCUGCgucCGUGGCCGcaguucucgcacagcGGCCAu- -3'
miRNA:   3'- -ACCGaCGACGa--GCGUCGGC---------------CCGGUug -5'
19306 3' -62 NC_004685.1 + 1912 0.68 0.277667
Target:  5'- -cGCUGCgGC-CGCGGuuGGcGUCAGCg -3'
miRNA:   3'- acCGACGaCGaGCGUCggCC-CGGUUG- -5'
19306 3' -62 NC_004685.1 + 13759 0.68 0.291445
Target:  5'- gGGCUGCUGCUgGCGuaccGCCccgauGGCguGCu -3'
miRNA:   3'- aCCGACGACGAgCGU----CGGc----CCGguUG- -5'
19306 3' -62 NC_004685.1 + 62931 0.68 0.298532
Target:  5'- cGGCUcGCUGCgcacCGCAGgCgggauguacuugGGGUCGACg -3'
miRNA:   3'- aCCGA-CGACGa---GCGUCgG------------CCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 66755 0.67 0.313105
Target:  5'- gGGCgguaGCUGauCUCGCucaccUCGGGCCGGCa -3'
miRNA:   3'- aCCGa---CGAC--GAGCGuc---GGCCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 16827 0.67 0.320592
Target:  5'- cGcGCUGCUGCgcuacgUCGcCAGCCuGuGGCCGGa -3'
miRNA:   3'- aC-CGACGACG------AGC-GUCGG-C-CCGGUUg -5'
19306 3' -62 NC_004685.1 + 61540 0.67 0.320592
Target:  5'- aGGCUGUcgacgaUGUagUCGaCAaaCCGGGCCAGCa -3'
miRNA:   3'- aCCGACG------ACG--AGC-GUc-GGCCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 35039 0.67 0.328211
Target:  5'- -cGCUGCgGCUC-CAGUCGGGCa--- -3'
miRNA:   3'- acCGACGaCGAGcGUCGGCCCGguug -5'
19306 3' -62 NC_004685.1 + 49316 0.67 0.328211
Target:  5'- aGGUa-CUGCUCG--GCCGcGGCCAGCa -3'
miRNA:   3'- aCCGacGACGAGCguCGGC-CCGGUUG- -5'
19306 3' -62 NC_004685.1 + 55297 0.68 0.270975
Target:  5'- -cGCUGCaGCUCGUgcucgaaauAGuuGcGGCCAGCg -3'
miRNA:   3'- acCGACGaCGAGCG---------UCggC-CCGGUUG- -5'
19306 3' -62 NC_004685.1 + 12889 0.68 0.270975
Target:  5'- -cGCUGCUGCccUCGUcgAGCgGGGCUGAa -3'
miRNA:   3'- acCGACGACG--AGCG--UCGgCCCGGUUg -5'
19306 3' -62 NC_004685.1 + 63194 0.68 0.270975
Target:  5'- cGuGCUGCaGCUCGUAGCCuucgaGGucGCCGAUg -3'
miRNA:   3'- aC-CGACGaCGAGCGUCGG-----CC--CGGUUG- -5'
19306 3' -62 NC_004685.1 + 59373 0.73 0.124852
Target:  5'- cGGCUGCUcUUCGguGUCGGG-CAGCa -3'
miRNA:   3'- aCCGACGAcGAGCguCGGCCCgGUUG- -5'
19306 3' -62 NC_004685.1 + 57922 0.73 0.134945
Target:  5'- aUGGCUGCgUGCagcuccUCGCGGCgcuccauCGGGCaCAGCg -3'
miRNA:   3'- -ACCGACG-ACG------AGCGUCG-------GCCCG-GUUG- -5'
19306 3' -62 NC_004685.1 + 21781 0.72 0.142717
Target:  5'- cGGUgaGCUGgUCGCAGUCGGGuCCAu- -3'
miRNA:   3'- aCCGa-CGACgAGCGUCGGCCC-GGUug -5'
19306 3' -62 NC_004685.1 + 49368 0.72 0.142717
Target:  5'- cGGUguaCUGCUCGCAGUCGcaguGCCGACa -3'
miRNA:   3'- aCCGac-GACGAGCGUCGGCc---CGGUUG- -5'
19306 3' -62 NC_004685.1 + 48404 0.71 0.185598
Target:  5'- -aGCUGUUGCUgGCAGuuGGGCgGu- -3'
miRNA:   3'- acCGACGACGAgCGUCggCCCGgUug -5'
19306 3' -62 NC_004685.1 + 33867 0.7 0.227152
Target:  5'- cGGCUcGCUGCUCGguGaggacuaCCGGGgCAu- -3'
miRNA:   3'- aCCGA-CGACGAGCguC-------GGCCCgGUug -5'
19306 3' -62 NC_004685.1 + 65055 0.69 0.233526
Target:  5'- aGGCgaccauCUCGCGGUCGGGCCAcuGCu -3'
miRNA:   3'- aCCGacgac-GAGCGUCGGCCCGGU--UG- -5'
19306 3' -62 NC_004685.1 + 9122 0.69 0.251678
Target:  5'- cGcGCgaGCUG-UCGCAGCCGGGCa--- -3'
miRNA:   3'- aC-CGa-CGACgAGCGUCGGCCCGguug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.