miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19306 3' -62 NC_004685.1 + 1912 0.68 0.277667
Target:  5'- -cGCUGCgGC-CGCGGuuGGcGUCAGCg -3'
miRNA:   3'- acCGACGaCGaGCGUCggCC-CGGUUG- -5'
19306 3' -62 NC_004685.1 + 2233 0.66 0.376707
Target:  5'- cGGgUGCcagaccugccUGC-CGCccGGCCGGGCUGAUg -3'
miRNA:   3'- aCCgACG----------ACGaGCG--UCGGCCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 2854 0.67 0.34385
Target:  5'- gGGUccacUGCUuggGCUUGCGGCCGGuGCgCAcgGCg -3'
miRNA:   3'- aCCG----ACGA---CGAGCGUCGGCC-CG-GU--UG- -5'
19306 3' -62 NC_004685.1 + 3506 0.66 0.360017
Target:  5'- -aGCUGCUGUUCuGCGGCCaucacGCCAAg -3'
miRNA:   3'- acCGACGACGAG-CGUCGGcc---CGGUUg -5'
19306 3' -62 NC_004685.1 + 6565 0.68 0.291445
Target:  5'- aGGUgcugGCaGCUCGgcacCGGCUGGGCgAGCa -3'
miRNA:   3'- aCCGa---CGaCGAGC----GUCGGCCCGgUUG- -5'
19306 3' -62 NC_004685.1 + 7030 0.72 0.156998
Target:  5'- cGGCUcgGuCUGCUCGCcgcgcugcgcaacGCCaGGGCCGACa -3'
miRNA:   3'- aCCGA--C-GACGAGCGu------------CGG-CCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 9122 0.69 0.251678
Target:  5'- cGcGCgaGCUG-UCGCAGCCGGGCa--- -3'
miRNA:   3'- aC-CGa-CGACgAGCGUCGGCCCGguug -5'
19306 3' -62 NC_004685.1 + 9784 0.66 0.402702
Target:  5'- cGGCUGggGUUCGCcuaCCGcGGCCGccGCg -3'
miRNA:   3'- aCCGACgaCGAGCGuc-GGC-CCGGU--UG- -5'
19306 3' -62 NC_004685.1 + 11074 0.69 0.264414
Target:  5'- gUGGCcGCgGCgacacugCGCAGCaaCGGGCgCGACg -3'
miRNA:   3'- -ACCGaCGaCGa------GCGUCG--GCCCG-GUUG- -5'
19306 3' -62 NC_004685.1 + 11366 0.72 0.142717
Target:  5'- aGGCUGUg---C-CGGCCGGGCCGACc -3'
miRNA:   3'- aCCGACGacgaGcGUCGGCCCGGUUG- -5'
19306 3' -62 NC_004685.1 + 12477 0.66 0.376707
Target:  5'- gGGCcGaccgUGgaCGCGGCCGGugccGCCAACg -3'
miRNA:   3'- aCCGaCg---ACgaGCGUCGGCC----CGGUUG- -5'
19306 3' -62 NC_004685.1 + 12628 0.73 0.120234
Target:  5'- gGGCaggaaaucgaccgGCUGCUCGCcGCCGGGCgGGu -3'
miRNA:   3'- aCCGa------------CGACGAGCGuCGGCCCGgUUg -5'
19306 3' -62 NC_004685.1 + 12889 0.68 0.270975
Target:  5'- -cGCUGCUGCccUCGUcgAGCgGGGCUGAa -3'
miRNA:   3'- acCGACGACG--AGCG--UCGgCCCGGUUg -5'
19306 3' -62 NC_004685.1 + 13759 0.68 0.291445
Target:  5'- gGGCUGCUGCUgGCGuaccGCCccgauGGCguGCu -3'
miRNA:   3'- aCCGACGACGAgCGU----CGGc----CCGguUG- -5'
19306 3' -62 NC_004685.1 + 14167 0.71 0.189971
Target:  5'- gGGCauucagaUGCUGCUCGaC-GCCGGGCUg-- -3'
miRNA:   3'- aCCG-------ACGACGAGC-GuCGGCCCGGuug -5'
19306 3' -62 NC_004685.1 + 15082 0.77 0.064687
Target:  5'- gGGgaGCUGCUCGguGCCGaGGUCcGCu -3'
miRNA:   3'- aCCgaCGACGAGCguCGGC-CCGGuUG- -5'
19306 3' -62 NC_004685.1 + 16827 0.67 0.320592
Target:  5'- cGcGCUGCUGCgcuacgUCGcCAGCCuGuGGCCGGa -3'
miRNA:   3'- aC-CGACGACG------AGC-GUCGG-C-CCGGUUg -5'
19306 3' -62 NC_004685.1 + 17022 0.69 0.264414
Target:  5'- -cGCUGCUGCUCaccgugguGCAGaaGauGGCCGACa -3'
miRNA:   3'- acCGACGACGAG--------CGUCggC--CCGGUUG- -5'
19306 3' -62 NC_004685.1 + 19683 0.68 0.305752
Target:  5'- gUGGCUGCacgagcgGC-CGUGG-CGGGCCGAg -3'
miRNA:   3'- -ACCGACGa------CGaGCGUCgGCCCGGUUg -5'
19306 3' -62 NC_004685.1 + 20879 0.7 0.200527
Target:  5'- aUGGCUGaCUGCggGCAcgagaagguGCCGGGUgAGCc -3'
miRNA:   3'- -ACCGAC-GACGagCGU---------CGGCCCGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.