miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19306 5' -57.1 NC_004685.1 + 47900 0.96 0.007749
Target:  5'- uUGAU-GACCCGACUGCGACCAGCUCAc -3'
miRNA:   3'- -ACUAcCUGGGCUGACGCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 16451 0.78 0.14607
Target:  5'- cUGGUaGGccuGCCCGGC-GCGACCGGCUCGc -3'
miRNA:   3'- -ACUA-CC---UGGGCUGaCGCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 60561 0.75 0.222799
Target:  5'- cGAU--GCCCGGCUGCGA-CAGCUCGc -3'
miRNA:   3'- aCUAccUGGGCUGACGCUgGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 11845 0.75 0.222799
Target:  5'- uUGGUGGGCgCGACcGcCGACCuGCUCGg -3'
miRNA:   3'- -ACUACCUGgGCUGaC-GCUGGuCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 5443 0.74 0.234503
Target:  5'- gGGUGGACCUGuauCUGCGgGCCGGCg-- -3'
miRNA:   3'- aCUACCUGGGCu--GACGC-UGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 30173 0.74 0.240546
Target:  5'- cGcgGGACCgGcuaucGCUGCGACCAGCg-- -3'
miRNA:   3'- aCuaCCUGGgC-----UGACGCUGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 21817 0.74 0.266025
Target:  5'- gGAguuGGCCCGGCUGCGAgCAGCa-- -3'
miRNA:   3'- aCUac-CUGGGCUGACGCUgGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 53366 0.73 0.300891
Target:  5'- cGGUGG-CCgCGGCgaUGCuGGCCAGCUCGu -3'
miRNA:   3'- aCUACCuGG-GCUG--ACG-CUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 19178 0.71 0.3638
Target:  5'- aGAUGGAuggcUCCGggGCUGcCGGCCGGUUCGu -3'
miRNA:   3'- aCUACCU----GGGC--UGAC-GCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 13410 0.71 0.372276
Target:  5'- cUGGUGGACCgGACgcaGC-ACCGGUUCu -3'
miRNA:   3'- -ACUACCUGGgCUGa--CGcUGGUCGAGu -5'
19306 5' -57.1 NC_004685.1 + 30050 0.7 0.425879
Target:  5'- cGGUGGugUCGGCaucGCgGGCCGGUUCGg -3'
miRNA:   3'- aCUACCugGGCUGa--CG-CUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 38676 0.7 0.444741
Target:  5'- gUGGUGGGcguCCUGGagGgGACCAGCUCAc -3'
miRNA:   3'- -ACUACCU---GGGCUgaCgCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 37092 0.69 0.464062
Target:  5'- ---cGGugCCGguguGCUGCGugCGGUUCGg -3'
miRNA:   3'- acuaCCugGGC----UGACGCugGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 40653 0.69 0.473885
Target:  5'- cGAUGGACUgCGACgcgGCGACC-GCa-- -3'
miRNA:   3'- aCUACCUGG-GCUGa--CGCUGGuCGagu -5'
19306 5' -57.1 NC_004685.1 + 7552 0.69 0.473885
Target:  5'- aGGUGG-CCCGcCUgGUGGCCAGCcCGg -3'
miRNA:   3'- aCUACCuGGGCuGA-CGCUGGUCGaGU- -5'
19306 5' -57.1 NC_004685.1 + 42939 0.69 0.483812
Target:  5'- gUGGUGGccgcGCCCGAa-GCGuCCGGUUCGa -3'
miRNA:   3'- -ACUACC----UGGGCUgaCGCuGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 27866 0.69 0.493838
Target:  5'- aGGUcGACUCGA-UGCGcACCGGCUCGa -3'
miRNA:   3'- aCUAcCUGGGCUgACGC-UGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 32925 0.69 0.493838
Target:  5'- aGGUGaacucCCCGAgaGUGugCAGCUCAa -3'
miRNA:   3'- aCUACcu---GGGCUgaCGCugGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 11327 0.69 0.503957
Target:  5'- gGAUGGGCCguGC-GCGACCGGCg-- -3'
miRNA:   3'- aCUACCUGGgcUGaCGCUGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 43691 0.69 0.514166
Target:  5'- cUGggGGuacGCCCGACUGUcccGCgAGCUCAc -3'
miRNA:   3'- -ACuaCC---UGGGCUGACGc--UGgUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.