miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19306 5' -57.1 NC_004685.1 + 1253 0.68 0.524457
Target:  5'- cGAUgucGGAUCCGGCUaCGcagggcaucGCCAGCUCGg -3'
miRNA:   3'- aCUA---CCUGGGCUGAcGC---------UGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 1840 0.66 0.694707
Target:  5'- ----cGACCaucggGACgGUGACCAGCUCGg -3'
miRNA:   3'- acuacCUGGg----CUGaCGCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 3594 0.68 0.566335
Target:  5'- gUGAUGG-CCCGGCaccGCGACUacGGCggCAc -3'
miRNA:   3'- -ACUACCuGGGCUGa--CGCUGG--UCGa-GU- -5'
19306 5' -57.1 NC_004685.1 + 5443 0.74 0.234503
Target:  5'- gGGUGGACCUGuauCUGCGgGCCGGCg-- -3'
miRNA:   3'- aCUACCUGGGCu--GACGC-UGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 7384 0.67 0.605802
Target:  5'- cGAUGGuCCCGACggcaaGCGgugcgagggcgcagGCCAGCg-- -3'
miRNA:   3'- aCUACCuGGGCUGa----CGC--------------UGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 7552 0.69 0.473885
Target:  5'- aGGUGG-CCCGcCUgGUGGCCAGCcCGg -3'
miRNA:   3'- aCUACCuGGGCuGA-CGCUGGUCGaGU- -5'
19306 5' -57.1 NC_004685.1 + 11327 0.69 0.503957
Target:  5'- gGAUGGGCCguGC-GCGACCGGCg-- -3'
miRNA:   3'- aCUACCUGGgcUGaCGCUGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 11845 0.75 0.222799
Target:  5'- uUGGUGGGCgCGACcGcCGACCuGCUCGg -3'
miRNA:   3'- -ACUACCUGgGCUGaC-GCUGGuCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 13410 0.71 0.372276
Target:  5'- cUGGUGGACCgGACgcaGC-ACCGGUUCu -3'
miRNA:   3'- -ACUACCUGGgCUGa--CGcUGGUCGAGu -5'
19306 5' -57.1 NC_004685.1 + 16451 0.78 0.14607
Target:  5'- cUGGUaGGccuGCCCGGC-GCGACCGGCUCGc -3'
miRNA:   3'- -ACUA-CC---UGGGCUGaCGCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 16947 0.67 0.576949
Target:  5'- aGcAUGGAgauucagcaucaCCCGACUGCccGGCCGGCg-- -3'
miRNA:   3'- aC-UACCU------------GGGCUGACG--CUGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 17096 0.66 0.684093
Target:  5'- cGGccUGGuCCacauCGACUGCGACCuguacAGCUCc -3'
miRNA:   3'- aCU--ACCuGG----GCUGACGCUGG-----UCGAGu -5'
19306 5' -57.1 NC_004685.1 + 19178 0.71 0.3638
Target:  5'- aGAUGGAuggcUCCGggGCUGcCGGCCGGUUCGu -3'
miRNA:   3'- aCUACCU----GGGC--UGAC-GCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 21551 0.66 0.662732
Target:  5'- gGGUGGugCCGGCaUGagcuaCGACCuggaccugcguAGCUCGg -3'
miRNA:   3'- aCUACCugGGCUG-AC-----GCUGG-----------UCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 21817 0.74 0.266025
Target:  5'- gGAguuGGCCCGGCUGCGAgCAGCa-- -3'
miRNA:   3'- aCUac-CUGGGCUGACGCUgGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 23866 0.67 0.630511
Target:  5'- cGAcGGugCCGaugcGCUGCGccaccuccaggGCCAGCUUg -3'
miRNA:   3'- aCUaCCugGGC----UGACGC-----------UGGUCGAGu -5'
19306 5' -57.1 NC_004685.1 + 24452 0.67 0.630511
Target:  5'- aGAUGGcguucuuguCCUG-CUGCGAaucacCCGGCUCGg -3'
miRNA:   3'- aCUACCu--------GGGCuGACGCU-----GGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 27116 0.66 0.684093
Target:  5'- gGA-GGACgUgGGCUGaUGGCCGGCUCu -3'
miRNA:   3'- aCUaCCUG-GgCUGAC-GCUGGUCGAGu -5'
19306 5' -57.1 NC_004685.1 + 27866 0.69 0.493838
Target:  5'- aGGUcGACUCGA-UGCGcACCGGCUCGa -3'
miRNA:   3'- aCUAcCUGGGCUgACGC-UGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 29636 0.68 0.555772
Target:  5'- aGAUGuGGCCCGcgucgauCUGCG-CCAGCa-- -3'
miRNA:   3'- aCUAC-CUGGGCu------GACGCuGGUCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.