miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19306 5' -57.1 NC_004685.1 + 62365 0.66 0.684093
Target:  5'- aGAUGGugaACCCaGCcGCuuCCAGCUCGu -3'
miRNA:   3'- aCUACC---UGGGcUGaCGcuGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 7384 0.67 0.605802
Target:  5'- cGAUGGuCCCGACggcaaGCGgugcgagggcgcagGCCAGCg-- -3'
miRNA:   3'- aCUACCuGGGCUGa----CGC--------------UGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 48168 0.67 0.609021
Target:  5'- cGAUGuGGCCCGGCUcGuCGGgCAGCa-- -3'
miRNA:   3'- aCUAC-CUGGGCUGA-C-GCUgGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 33647 0.67 0.619761
Target:  5'- gUGAgaacGGcAUCCGGCUGCGACUcaaGGCguUCAg -3'
miRNA:   3'- -ACUa---CC-UGGGCUGACGCUGG---UCG--AGU- -5'
19306 5' -57.1 NC_004685.1 + 63123 0.67 0.630511
Target:  5'- ---cGGugCCGAgCUGCcagcaccuccagGAUCAGCUCGg -3'
miRNA:   3'- acuaCCugGGCU-GACG------------CUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 45081 0.66 0.652006
Target:  5'- aGGUGGGCgCGG-UGUGGCCggacuacggcGGCUCAc -3'
miRNA:   3'- aCUACCUGgGCUgACGCUGG----------UCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 44259 0.66 0.667016
Target:  5'- cGAucuUGGcGCCCGACuacaccaaggaagugUGgGACCAGCUg- -3'
miRNA:   3'- aCU---ACC-UGGGCUG---------------ACgCUGGUCGAgu -5'
19306 5' -57.1 NC_004685.1 + 17096 0.66 0.684093
Target:  5'- cGGccUGGuCCacauCGACUGCGACCuguacAGCUCc -3'
miRNA:   3'- aCU--ACCuGG----GCUGACGCUGG-----UCGAGu -5'
19306 5' -57.1 NC_004685.1 + 27116 0.66 0.684093
Target:  5'- gGA-GGACgUgGGCUGaUGGCCGGCUCu -3'
miRNA:   3'- aCUaCCUG-GgCUGAC-GCUGGUCGAGu -5'
19306 5' -57.1 NC_004685.1 + 42806 0.68 0.555772
Target:  5'- -cGUGGACCCuGGCUccCGGCCAGgUCGc -3'
miRNA:   3'- acUACCUGGG-CUGAc-GCUGGUCgAGU- -5'
19306 5' -57.1 NC_004685.1 + 32027 0.68 0.545267
Target:  5'- cGGUGGACCCcaagGCGACgAGCg-- -3'
miRNA:   3'- aCUACCUGGGcugaCGCUGgUCGagu -5'
19306 5' -57.1 NC_004685.1 + 1253 0.68 0.524457
Target:  5'- cGAUgucGGAUCCGGCUaCGcagggcaucGCCAGCUCGg -3'
miRNA:   3'- aCUA---CCUGGGCUGAcGC---------UGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 11845 0.75 0.222799
Target:  5'- uUGGUGGGCgCGACcGcCGACCuGCUCGg -3'
miRNA:   3'- -ACUACCUGgGCUGaC-GCUGGuCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 30173 0.74 0.240546
Target:  5'- cGcgGGACCgGcuaucGCUGCGACCAGCg-- -3'
miRNA:   3'- aCuaCCUGGgC-----UGACGCUGGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 21817 0.74 0.266025
Target:  5'- gGAguuGGCCCGGCUGCGAgCAGCa-- -3'
miRNA:   3'- aCUac-CUGGGCUGACGCUgGUCGagu -5'
19306 5' -57.1 NC_004685.1 + 53366 0.73 0.300891
Target:  5'- cGGUGG-CCgCGGCgaUGCuGGCCAGCUCGu -3'
miRNA:   3'- aCUACCuGG-GCUG--ACG-CUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 30050 0.7 0.425879
Target:  5'- cGGUGGugUCGGCaucGCgGGCCGGUUCGg -3'
miRNA:   3'- aCUACCugGGCUGa--CG-CUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 38676 0.7 0.444741
Target:  5'- gUGGUGGGcguCCUGGagGgGACCAGCUCAc -3'
miRNA:   3'- -ACUACCU---GGGCUgaCgCUGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 42939 0.69 0.483812
Target:  5'- gUGGUGGccgcGCCCGAa-GCGuCCGGUUCGa -3'
miRNA:   3'- -ACUACC----UGGGCUgaCGCuGGUCGAGU- -5'
19306 5' -57.1 NC_004685.1 + 32925 0.69 0.493838
Target:  5'- aGGUGaacucCCCGAgaGUGugCAGCUCAa -3'
miRNA:   3'- aCUACcu---GGGCUgaCGCugGUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.