miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19322 5' -55.7 NC_004685.1 + 38745 1.11 0.000999
Target:  5'- aGCCUGAAUGACGUCGUACGCCGCCCGa -3'
miRNA:   3'- -CGGACUUACUGCAGCAUGCGGCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 35717 0.77 0.230449
Target:  5'- cGUUUGcGUGGCGUUGU-CGCCGCCCc -3'
miRNA:   3'- -CGGACuUACUGCAGCAuGCGGCGGGc -5'
19322 5' -55.7 NC_004685.1 + 8165 0.77 0.230449
Target:  5'- aGCCUGGggguggccaaAUGAuCGUCGcgACGCCGCCgGg -3'
miRNA:   3'- -CGGACU----------UACU-GCAGCa-UGCGGCGGgC- -5'
19322 5' -55.7 NC_004685.1 + 23749 0.74 0.356935
Target:  5'- cGCCUacuccGGCGUucgCGUACGCUGCCCGc -3'
miRNA:   3'- -CGGAcuua-CUGCA---GCAUGCGGCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 38597 0.72 0.445707
Target:  5'- uGCC-GAAgucGGCGUCGaGCGCCGCaCCc -3'
miRNA:   3'- -CGGaCUUa--CUGCAGCaUGCGGCG-GGc -5'
19322 5' -55.7 NC_004685.1 + 30971 0.71 0.474656
Target:  5'- uCCUGGAUGGaGUCGaUGCGCaGCCUGa -3'
miRNA:   3'- cGGACUUACUgCAGC-AUGCGgCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 27234 0.7 0.535156
Target:  5'- gGCCgu--UGGCacccgcacaguuGUCGUACGCCGCCgGu -3'
miRNA:   3'- -CGGacuuACUG------------CAGCAUGCGGCGGgC- -5'
19322 5' -55.7 NC_004685.1 + 41003 0.7 0.544479
Target:  5'- uCCUG-GUGGCGUCGccgACGCgaucgaaCGCCCGc -3'
miRNA:   3'- cGGACuUACUGCAGCa--UGCG-------GCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 46779 0.7 0.576958
Target:  5'- gGCCgggGAuugGUGGCGUCGcggUACGCCGguaaCCGc -3'
miRNA:   3'- -CGGa--CU---UACUGCAGC---AUGCGGCg---GGC- -5'
19322 5' -55.7 NC_004685.1 + 17160 0.69 0.587534
Target:  5'- aCCUG-AUGGCGUCGgcguuCGCCGCg-- -3'
miRNA:   3'- cGGACuUACUGCAGCau---GCGGCGggc -5'
19322 5' -55.7 NC_004685.1 + 65953 0.69 0.608782
Target:  5'- cGCCcagcGUGACGUggCGcUGCGCCaGCCCGu -3'
miRNA:   3'- -CGGacu-UACUGCA--GC-AUGCGG-CGGGC- -5'
19322 5' -55.7 NC_004685.1 + 3124 0.68 0.640774
Target:  5'- uCCUGggUGAgGcCGU-CGUCGCUCa -3'
miRNA:   3'- cGGACuuACUgCaGCAuGCGGCGGGc -5'
19322 5' -55.7 NC_004685.1 + 53455 0.68 0.64184
Target:  5'- aGCCUGcGUucGACGcCGagccaguacaggggaACGCCGCCCGu -3'
miRNA:   3'- -CGGACuUA--CUGCaGCa--------------UGCGGCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 60475 0.68 0.672698
Target:  5'- gGCCUccuUGGCGUCGgg-GUCGCCCc -3'
miRNA:   3'- -CGGAcuuACUGCAGCaugCGGCGGGc -5'
19322 5' -55.7 NC_004685.1 + 28230 0.68 0.693817
Target:  5'- gGCCaGAuaacgGUGAUGUCGc-CGCCGUUCGg -3'
miRNA:   3'- -CGGaCU-----UACUGCAGCauGCGGCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 57844 0.67 0.745455
Target:  5'- aCCgcaGAUGACGUugaccuccaccCGUgagaACGCCGCCUGg -3'
miRNA:   3'- cGGac-UUACUGCA-----------GCA----UGCGGCGGGC- -5'
19322 5' -55.7 NC_004685.1 + 64975 0.67 0.745455
Target:  5'- gGCCgGGAUGAuCG-CGUAgcCGCacaGCCCGu -3'
miRNA:   3'- -CGGaCUUACU-GCaGCAU--GCGg--CGGGC- -5'
19322 5' -55.7 NC_004685.1 + 3466 0.67 0.745455
Target:  5'- uGCaCUGAGggcagcccuuguUGGCGUCGUG-GCCGCacaCGu -3'
miRNA:   3'- -CG-GACUU------------ACUGCAGCAUgCGGCGg--GC- -5'
19322 5' -55.7 NC_004685.1 + 44003 0.67 0.745455
Target:  5'- aGCCUGGAggaaacccucGGCGcCGUGCGCaagaaggagGCCCu -3'
miRNA:   3'- -CGGACUUa---------CUGCaGCAUGCGg--------CGGGc -5'
19322 5' -55.7 NC_004685.1 + 31402 0.66 0.755501
Target:  5'- cCCUGGaaacuucgGUGAcCG-CGUGCccuacgguuuGCCGCCCGg -3'
miRNA:   3'- cGGACU--------UACU-GCaGCAUG----------CGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.