Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19322 | 5' | -55.7 | NC_004685.1 | + | 100 | 0.66 | 0.784886 |
Target: 5'- gGCCUGu-UGGCGUgG-ACGCCGUUg- -3' miRNA: 3'- -CGGACuuACUGCAgCaUGCGGCGGgc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 700 | 0.66 | 0.788709 |
Target: 5'- aGCgUGggUGGCGgCGggagggugaucccgACGCCGUgCGa -3' miRNA: 3'- -CGgACuuACUGCaGCa-------------UGCGGCGgGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 1871 | 0.66 | 0.775226 |
Target: 5'- gGCCagguugaGGAUGGCGUCGgucAgGCCGCggCCGu -3' miRNA: 3'- -CGGa------CUUACUGCAGCa--UgCGGCG--GGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 2901 | 0.66 | 0.775226 |
Target: 5'- aCCUGG-UGACGgUGUggccAUGCCgGCCCGa -3' miRNA: 3'- cGGACUuACUGCaGCA----UGCGG-CGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 3124 | 0.68 | 0.640774 |
Target: 5'- uCCUGggUGAgGcCGU-CGUCGCUCa -3' miRNA: 3'- cGGACuuACUgCaGCAuGCGGCGGGc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 3466 | 0.67 | 0.745455 |
Target: 5'- uGCaCUGAGggcagcccuuguUGGCGUCGUG-GCCGCacaCGu -3' miRNA: 3'- -CG-GACUU------------ACUGCAGCAUgCGGCGg--GC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 8028 | 0.66 | 0.794396 |
Target: 5'- aCCUGGGcGACGggcUGUACGUCaCCCGc -3' miRNA: 3'- cGGACUUaCUGCa--GCAUGCGGcGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 8165 | 0.77 | 0.230449 |
Target: 5'- aGCCUGGggguggccaaAUGAuCGUCGcgACGCCGCCgGg -3' miRNA: 3'- -CGGACU----------UACU-GCAGCa-UGCGGCGGgC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 8212 | 0.66 | 0.783927 |
Target: 5'- uCCUGuGAUGcccgacgacaacaGCGUCGgcuacggcgACGCUGCCCa -3' miRNA: 3'- cGGAC-UUAC-------------UGCAGCa--------UGCGGCGGGc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 14288 | 0.66 | 0.765428 |
Target: 5'- aGCCUGAccGAgGgugCG-ACGCUGgCCGa -3' miRNA: 3'- -CGGACUuaCUgCa--GCaUGCGGCgGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 14338 | 0.66 | 0.784886 |
Target: 5'- aGCagUGGAUGAacgccaaccCGUCGUGC-CCGCaCCGc -3' miRNA: 3'- -CGg-ACUUACU---------GCAGCAUGcGGCG-GGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 17160 | 0.69 | 0.587534 |
Target: 5'- aCCUG-AUGGCGUCGgcguuCGCCGCg-- -3' miRNA: 3'- cGGACuUACUGCAGCau---GCGGCGggc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 23749 | 0.74 | 0.356935 |
Target: 5'- cGCCUacuccGGCGUucgCGUACGCUGCCCGc -3' miRNA: 3'- -CGGAcuua-CUGCA---GCAUGCGGCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 25327 | 0.66 | 0.775226 |
Target: 5'- gGCCU---UGGCGcaUCGUcuUGCCGCCCu -3' miRNA: 3'- -CGGAcuuACUGC--AGCAu-GCGGCGGGc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 27234 | 0.7 | 0.535156 |
Target: 5'- gGCCgu--UGGCacccgcacaguuGUCGUACGCCGCCgGu -3' miRNA: 3'- -CGGacuuACUG------------CAGCAUGCGGCGGgC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 28230 | 0.68 | 0.693817 |
Target: 5'- gGCCaGAuaacgGUGAUGUCGc-CGCCGUUCGg -3' miRNA: 3'- -CGGaCU-----UACUGCAGCauGCGGCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 30335 | 0.66 | 0.784886 |
Target: 5'- cGCC-GAggGugGUCugGUccGCGCCGCCg- -3' miRNA: 3'- -CGGaCUuaCugCAG--CA--UGCGGCGGgc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 30971 | 0.71 | 0.474656 |
Target: 5'- uCCUGGAUGGaGUCGaUGCGCaGCCUGa -3' miRNA: 3'- cGGACUUACUgCAGC-AUGCGgCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 31402 | 0.66 | 0.755501 |
Target: 5'- cCCUGGaaacuucgGUGAcCG-CGUGCccuacgguuuGCCGCCCGg -3' miRNA: 3'- cGGACU--------UACU-GCaGCAUG----------CGGCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 31580 | 0.66 | 0.775226 |
Target: 5'- cGCCUGAAUGcggcccagcAgGUCuUGCaGCUGCUCGg -3' miRNA: 3'- -CGGACUUAC---------UgCAGcAUG-CGGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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