Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19322 | 5' | -55.7 | NC_004685.1 | + | 23749 | 0.74 | 0.356935 |
Target: 5'- cGCCUacuccGGCGUucgCGUACGCUGCCCGc -3' miRNA: 3'- -CGGAcuua-CUGCA---GCAUGCGGCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 36599 | 0.66 | 0.794396 |
Target: 5'- cGCCgaGGAccUGGCGg-GUGCGCuCGCCgCGg -3' miRNA: 3'- -CGGa-CUU--ACUGCagCAUGCG-GCGG-GC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 700 | 0.66 | 0.788709 |
Target: 5'- aGCgUGggUGGCGgCGggagggugaucccgACGCCGUgCGa -3' miRNA: 3'- -CGgACuuACUGCaGCa-------------UGCGGCGgGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 33752 | 0.66 | 0.784886 |
Target: 5'- uGCCcGGcgaGACGUgGUGCGUCGUCgCGg -3' miRNA: 3'- -CGGaCUua-CUGCAgCAUGCGGCGG-GC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 14338 | 0.66 | 0.784886 |
Target: 5'- aGCagUGGAUGAacgccaaccCGUCGUGC-CCGCaCCGc -3' miRNA: 3'- -CGg-ACUUACU---------GCAGCAUGcGGCG-GGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 100 | 0.66 | 0.784886 |
Target: 5'- gGCCUGu-UGGCGUgG-ACGCCGUUg- -3' miRNA: 3'- -CGGACuuACUGCAgCaUGCGGCGGgc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 8212 | 0.66 | 0.783927 |
Target: 5'- uCCUGuGAUGcccgacgacaacaGCGUCGgcuacggcgACGCUGCCCa -3' miRNA: 3'- cGGAC-UUAC-------------UGCAGCa--------UGCGGCGGGc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 25327 | 0.66 | 0.775226 |
Target: 5'- gGCCU---UGGCGcaUCGUcuUGCCGCCCu -3' miRNA: 3'- -CGGAcuuACUGC--AGCAu-GCGGCGGGc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 1871 | 0.66 | 0.775226 |
Target: 5'- gGCCagguugaGGAUGGCGUCGgucAgGCCGCggCCGu -3' miRNA: 3'- -CGGa------CUUACUGCAGCa--UgCGGCG--GGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 31402 | 0.66 | 0.755501 |
Target: 5'- cCCUGGaaacuucgGUGAcCG-CGUGCccuacgguuuGCCGCCCGg -3' miRNA: 3'- cGGACU--------UACU-GCaGCAUG----------CGGCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 30971 | 0.71 | 0.474656 |
Target: 5'- uCCUGGAUGGaGUCGaUGCGCaGCCUGa -3' miRNA: 3'- cGGACUUACUgCAGC-AUGCGgCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 46779 | 0.7 | 0.576958 |
Target: 5'- gGCCgggGAuugGUGGCGUCGcggUACGCCGguaaCCGc -3' miRNA: 3'- -CGGa--CU---UACUGCAGC---AUGCGGCg---GGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 65953 | 0.69 | 0.608782 |
Target: 5'- cGCCcagcGUGACGUggCGcUGCGCCaGCCCGu -3' miRNA: 3'- -CGGacu-UACUGCA--GC-AUGCGG-CGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 3124 | 0.68 | 0.640774 |
Target: 5'- uCCUGggUGAgGcCGU-CGUCGCUCa -3' miRNA: 3'- cGGACuuACUgCaGCAuGCGGCGGGc -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 3466 | 0.67 | 0.745455 |
Target: 5'- uGCaCUGAGggcagcccuuguUGGCGUCGUG-GCCGCacaCGu -3' miRNA: 3'- -CG-GACUU------------ACUGCAGCAUgCGGCGg--GC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 64975 | 0.67 | 0.745455 |
Target: 5'- gGCCgGGAUGAuCG-CGUAgcCGCacaGCCCGu -3' miRNA: 3'- -CGGaCUUACU-GCaGCAU--GCGg--CGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 57844 | 0.67 | 0.745455 |
Target: 5'- aCCgcaGAUGACGUugaccuccaccCGUgagaACGCCGCCUGg -3' miRNA: 3'- cGGac-UUACUGCA-----------GCA----UGCGGCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 38745 | 1.11 | 0.000999 |
Target: 5'- aGCCUGAAUGACGUCGUACGCCGCCCGa -3' miRNA: 3'- -CGGACUUACUGCAGCAUGCGGCGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 8028 | 0.66 | 0.794396 |
Target: 5'- aCCUGGGcGACGggcUGUACGUCaCCCGc -3' miRNA: 3'- cGGACUUaCUGCa--GCAUGCGGcGGGC- -5' |
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19322 | 5' | -55.7 | NC_004685.1 | + | 30335 | 0.66 | 0.784886 |
Target: 5'- cGCC-GAggGugGUCugGUccGCGCCGCCg- -3' miRNA: 3'- -CGGaCUuaCugCAG--CA--UGCGGCGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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