miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19331 3' -55.7 NC_004685.1 + 30908 1.08 0.001635
Target:  5'- uGUGCGAACCGCCGACCGAGACGAACAc -3'
miRNA:   3'- -CACGCUUGGCGGCUGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 8471 0.78 0.197912
Target:  5'- gGUGCGGcCgCGCUGGCCGAGGCuGAGCGc -3'
miRNA:   3'- -CACGCUuG-GCGGCUGGCUCUG-CUUGU- -5'
19331 3' -55.7 NC_004685.1 + 26615 0.77 0.208475
Target:  5'- uGUGCGc-CCaGCCGACCGcGGCGAGCAc -3'
miRNA:   3'- -CACGCuuGG-CGGCUGGCuCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 14369 0.76 0.25568
Target:  5'- aUGCGGGCCGCUGGCCgcaacuauuucGAGcACGAGCu -3'
miRNA:   3'- cACGCUUGGCGGCUGG-----------CUC-UGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 44068 0.75 0.296578
Target:  5'- -cGCGAccuGCgGUCGGCCGGGACGAcCAu -3'
miRNA:   3'- caCGCU---UGgCGGCUGGCUCUGCUuGU- -5'
19331 3' -55.7 NC_004685.1 + 64065 0.75 0.296578
Target:  5'- -cGCGGuACCGauGAUCGAGGCGAGCGg -3'
miRNA:   3'- caCGCU-UGGCggCUGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 16192 0.73 0.358743
Target:  5'- cGUGCaGAACC-UCG-CCGAGACGGGCGg -3'
miRNA:   3'- -CACG-CUUGGcGGCuGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 55680 0.73 0.384293
Target:  5'- gGUGCGA--CGCUGGCCGGcACGGACAu -3'
miRNA:   3'- -CACGCUugGCGGCUGGCUcUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 11851 0.73 0.384293
Target:  5'- -gGCGcGACCGCCGACCugcucggcGAGGCGAu-- -3'
miRNA:   3'- caCGC-UUGGCGGCUGG--------CUCUGCUugu -5'
19331 3' -55.7 NC_004685.1 + 38737 0.72 0.401984
Target:  5'- -aGCcGAUCGCCG-CUGAGGCGGGCGa -3'
miRNA:   3'- caCGcUUGGCGGCuGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 14423 0.72 0.429468
Target:  5'- cUGCGcGCCGa-GGCCGAGGCGAAgGa -3'
miRNA:   3'- cACGCuUGGCggCUGGCUCUGCUUgU- -5'
19331 3' -55.7 NC_004685.1 + 56928 0.72 0.438872
Target:  5'- uGUGUGAGCCGCUGGCCauGAugcGGCGGuACAc -3'
miRNA:   3'- -CACGCUUGGCGGCUGG--CU---CUGCU-UGU- -5'
19331 3' -55.7 NC_004685.1 + 62879 0.71 0.448393
Target:  5'- gGUGCGAaguaGCCGCCGgucACCgGGGGCGGGg- -3'
miRNA:   3'- -CACGCU----UGGCGGC---UGG-CUCUGCUUgu -5'
19331 3' -55.7 NC_004685.1 + 14300 0.71 0.458027
Target:  5'- gGUGCGA--CGCUGGCCGAGgcuGCGggUAu -3'
miRNA:   3'- -CACGCUugGCGGCUGGCUC---UGCuuGU- -5'
19331 3' -55.7 NC_004685.1 + 60644 0.71 0.467771
Target:  5'- -cGCGAcCCGUccagggugaCGACCGcGACGAACAc -3'
miRNA:   3'- caCGCUuGGCG---------GCUGGCuCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 59792 0.71 0.47762
Target:  5'- cUGCGGgguGCCGCCGcCCGAGuCGuccAGCAg -3'
miRNA:   3'- cACGCU---UGGCGGCuGGCUCuGC---UUGU- -5'
19331 3' -55.7 NC_004685.1 + 65927 0.71 0.48757
Target:  5'- -cGCGAGCU-UCGGCCG-GGCGAACAc -3'
miRNA:   3'- caCGCUUGGcGGCUGGCuCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 10337 0.71 0.497618
Target:  5'- -gGCGG--CGUCGGCUGAGAUGGGCAa -3'
miRNA:   3'- caCGCUugGCGGCUGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 57022 0.7 0.514906
Target:  5'- cUGCGGGCCGaccuucaccuugacCCGcCCGGcGGCGAGCAg -3'
miRNA:   3'- cACGCUUGGC--------------GGCuGGCU-CUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 734 0.7 0.517982
Target:  5'- cGUGCGAGCCgagguGCCGacgcaGCCGGacaGCGAACAu -3'
miRNA:   3'- -CACGCUUGG-----CGGC-----UGGCUc--UGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.