miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19331 3' -55.7 NC_004685.1 + 468 0.66 0.73999
Target:  5'- -cGUG-GCCGCC-ACCaugucgGAGACGGACAa -3'
miRNA:   3'- caCGCuUGGCGGcUGG------CUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 734 0.7 0.517982
Target:  5'- cGUGCGAGCCgagguGCCGacgcaGCCGGacaGCGAACAu -3'
miRNA:   3'- -CACGCUUGG-----CGGC-----UGGCUc--UGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 2204 0.69 0.577627
Target:  5'- aGUGCGAGCUgGCCGAgCUGGagcuggaagacgacGACGAGCu -3'
miRNA:   3'- -CACGCUUGG-CGGCU-GGCU--------------CUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 2911 0.67 0.698386
Target:  5'- gGUGUG-GCCauGCCGGcCCGAGGUGAGCGa -3'
miRNA:   3'- -CACGCuUGG--CGGCU-GGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 4373 0.66 0.760214
Target:  5'- -cGCGucaaauGGCCGCUGugCGAGAacugcggccaCGGACGc -3'
miRNA:   3'- caCGC------UUGGCGGCugGCUCU----------GCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 4464 0.67 0.729718
Target:  5'- -gGCGaGugCGUCGA-UGAGACGAGCGc -3'
miRNA:   3'- caCGC-UugGCGGCUgGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 5504 0.67 0.687805
Target:  5'- -gGCGGccaucGCCGCCGagcgGCCGGGguucuACGAGCu -3'
miRNA:   3'- caCGCU-----UGGCGGC----UGGCUC-----UGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 5573 0.66 0.770144
Target:  5'- -gGCGAGCCGgUGAgCuGGGCGGAUg -3'
miRNA:   3'- caCGCUUGGCgGCUgGcUCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 6452 0.68 0.666502
Target:  5'- -cGCGAcaacCCGUCGuGCUGGGACGAcaGCAu -3'
miRNA:   3'- caCGCUu---GGCGGC-UGGCUCUGCU--UGU- -5'
19331 3' -55.7 NC_004685.1 + 7508 0.7 0.54912
Target:  5'- -cGCGGGCCGCaaGCCGuacccGGCGAACu -3'
miRNA:   3'- caCGCUUGGCGgcUGGCu----CUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 7712 0.66 0.789587
Target:  5'- --aCGAACCaaCCGACUG-GACGAACu -3'
miRNA:   3'- cacGCUUGGc-GGCUGGCuCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 8471 0.78 0.197912
Target:  5'- gGUGCGGcCgCGCUGGCCGAGGCuGAGCGc -3'
miRNA:   3'- -CACGCUuG-GCGGCUGGCUCUG-CUUGU- -5'
19331 3' -55.7 NC_004685.1 + 9110 0.66 0.789587
Target:  5'- -cGCGAACUGCaCcGCCcucGGugGAGCAa -3'
miRNA:   3'- caCGCUUGGCG-GcUGGc--UCugCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 10337 0.71 0.497618
Target:  5'- -gGCGG--CGUCGGCUGAGAUGGGCAa -3'
miRNA:   3'- caCGCUugGCGGCUGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 11031 0.68 0.644003
Target:  5'- gGUGUGGuggaucgACCuGCCGACgCGGGcCGAACGc -3'
miRNA:   3'- -CACGCU-------UGG-CGGCUG-GCUCuGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 11271 0.66 0.789587
Target:  5'- -gGUGAucCCGCUGaACCG-GACGAugGg -3'
miRNA:   3'- caCGCUu-GGCGGC-UGGCuCUGCUugU- -5'
19331 3' -55.7 NC_004685.1 + 11851 0.73 0.384293
Target:  5'- -gGCGcGACCGCCGACCugcucggcGAGGCGAu-- -3'
miRNA:   3'- caCGC-UUGGCGGCUGG--------CUCUGCUugu -5'
19331 3' -55.7 NC_004685.1 + 12212 0.66 0.779939
Target:  5'- -gGCGGGCCaUCGACuuCGAGcCGAGCGa -3'
miRNA:   3'- caCGCUUGGcGGCUG--GCUCuGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 12594 0.66 0.770144
Target:  5'- cGUGUccGAACgCGCCG-CCGAGGugcgcaaggcCGGGCAg -3'
miRNA:   3'- -CACG--CUUG-GCGGCuGGCUCU----------GCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 13886 0.66 0.750159
Target:  5'- gGUGCuGGAggccaaCGuCCGcACCGAGGCGAGCc -3'
miRNA:   3'- -CACG-CUUg-----GC-GGC-UGGCUCUGCUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.