miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19331 3' -55.7 NC_004685.1 + 49671 0.66 0.770144
Target:  5'- -gGCGggUCGcCCGACuCGcgcAGACGggUg -3'
miRNA:   3'- caCGCuuGGC-GGCUG-GC---UCUGCuuGu -5'
19331 3' -55.7 NC_004685.1 + 34268 0.68 0.655799
Target:  5'- -cGCGucGCCGCUGGaaGAGACGAu-- -3'
miRNA:   3'- caCGCu-UGGCGGCUggCUCUGCUugu -5'
19331 3' -55.7 NC_004685.1 + 48681 0.67 0.69733
Target:  5'- -cGCGGuACCGCCGcgcgaucaccagcACCGGGGCaGACu -3'
miRNA:   3'- caCGCU-UGGCGGC-------------UGGCUCUGcUUGu -5'
19331 3' -55.7 NC_004685.1 + 18816 0.67 0.698386
Target:  5'- -cGCGcAACCGCCGACgGcuGCGGcuguACAg -3'
miRNA:   3'- caCGC-UUGGCGGCUGgCucUGCU----UGU- -5'
19331 3' -55.7 NC_004685.1 + 16256 0.67 0.718311
Target:  5'- -aGCGAgaccgagGCCGUCGACCu-GAUGGACc -3'
miRNA:   3'- caCGCU-------UGGCGGCUGGcuCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 29070 0.67 0.719353
Target:  5'- cGUGCuGACCGCUGGCgCGGcGGCGuucgGCAc -3'
miRNA:   3'- -CACGcUUGGCGGCUG-GCU-CUGCu---UGU- -5'
19331 3' -55.7 NC_004685.1 + 4464 0.67 0.729718
Target:  5'- -gGCGaGugCGUCGA-UGAGACGAGCGc -3'
miRNA:   3'- caCGC-UugGCGGCUgGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 58720 0.66 0.73999
Target:  5'- -cGaCGggUCGuuGGCCGucaucauGACGAACGc -3'
miRNA:   3'- caC-GCuuGGCggCUGGCu------CUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 26345 0.66 0.760214
Target:  5'- -cGaCGAGgCGauGGCCGAGuACGAGCAg -3'
miRNA:   3'- caC-GCUUgGCggCUGGCUC-UGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 56890 0.68 0.655799
Target:  5'- -cGCcAGCCGCuCGGCCuGGGCGAugGc -3'
miRNA:   3'- caCGcUUGGCG-GCUGGcUCUGCUugU- -5'
19331 3' -55.7 NC_004685.1 + 20349 0.68 0.655799
Target:  5'- -gGCGAACCGCUGcccGCCGcGGCGugaucGCGa -3'
miRNA:   3'- caCGCUUGGCGGC---UGGCuCUGCu----UGU- -5'
19331 3' -55.7 NC_004685.1 + 734 0.7 0.517982
Target:  5'- cGUGCGAGCCgagguGCCGacgcaGCCGGacaGCGAACAu -3'
miRNA:   3'- -CACGCUUGG-----CGGC-----UGGCUc--UGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 16192 0.73 0.358743
Target:  5'- cGUGCaGAACC-UCG-CCGAGACGGGCGg -3'
miRNA:   3'- -CACG-CUUGGcGGCuGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 11851 0.73 0.384293
Target:  5'- -gGCGcGACCGCCGACCugcucggcGAGGCGAu-- -3'
miRNA:   3'- caCGC-UUGGCGGCUGG--------CUCUGCUugu -5'
19331 3' -55.7 NC_004685.1 + 55680 0.73 0.384293
Target:  5'- gGUGCGA--CGCUGGCCGGcACGGACAu -3'
miRNA:   3'- -CACGCUugGCGGCUGGCUcUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 38737 0.72 0.401984
Target:  5'- -aGCcGAUCGCCG-CUGAGGCGGGCGa -3'
miRNA:   3'- caCGcUUGGCGGCuGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 56928 0.72 0.438872
Target:  5'- uGUGUGAGCCGCUGGCCauGAugcGGCGGuACAc -3'
miRNA:   3'- -CACGCUUGGCGGCUGG--CU---CUGCU-UGU- -5'
19331 3' -55.7 NC_004685.1 + 65927 0.71 0.48757
Target:  5'- -cGCGAGCU-UCGGCCG-GGCGAACAc -3'
miRNA:   3'- caCGCUUGGcGGCUGGCuCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 10337 0.71 0.497618
Target:  5'- -gGCGG--CGUCGGCUGAGAUGGGCAa -3'
miRNA:   3'- caCGCUugGCGGCUGGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 57022 0.7 0.514906
Target:  5'- cUGCGGGCCGaccuucaccuugacCCGcCCGGcGGCGAGCAg -3'
miRNA:   3'- cACGCUUGGC--------------GGCuGGCU-CUGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.