miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19453 5' -59.6 NC_004685.1 + 26320 1.11 0.000417
Target:  5'- cGCACCCCGACCUCGGGAUGCUCAGCGa -3'
miRNA:   3'- -CGUGGGGCUGGAGCCCUACGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 68563 0.78 0.096508
Target:  5'- gGCGCCCCGauGCgUCGGGGUGUUCGGa- -3'
miRNA:   3'- -CGUGGGGC--UGgAGCCCUACGAGUCgc -5'
19453 5' -59.6 NC_004685.1 + 26410 0.74 0.201633
Target:  5'- aGCAUCCCGAggUCGGGGUGCgggGGCa -3'
miRNA:   3'- -CGUGGGGCUggAGCCCUACGag-UCGc -5'
19453 5' -59.6 NC_004685.1 + 56355 0.73 0.223021
Target:  5'- uGCACUUCGGCCacgCGGGccaGCUCAGCc -3'
miRNA:   3'- -CGUGGGGCUGGa--GCCCua-CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 43817 0.73 0.228662
Target:  5'- cCGCCCCGACCUgcgCGGGccGCUC-GCc -3'
miRNA:   3'- cGUGGGGCUGGA---GCCCuaCGAGuCGc -5'
19453 5' -59.6 NC_004685.1 + 18602 0.71 0.27821
Target:  5'- cGCGCaCCGAauCCUCGGG--GCUCAGUGc -3'
miRNA:   3'- -CGUGgGGCU--GGAGCCCuaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 29376 0.71 0.291864
Target:  5'- aUACCCCaGCUgUGGGGUGC-CAGCGa -3'
miRNA:   3'- cGUGGGGcUGGaGCCCUACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 19459 0.71 0.298885
Target:  5'- gGCGCgUCGGCggUCGGGAUGUUUGGCGc -3'
miRNA:   3'- -CGUGgGGCUGg-AGCCCUACGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 16414 0.71 0.306037
Target:  5'- gGCACcgCCCGucACCagcgCGGGAUGCcCGGCGu -3'
miRNA:   3'- -CGUG--GGGC--UGGa---GCCCUACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 43321 0.7 0.32073
Target:  5'- cGCGCCuuGGCCUCGGucacGAUGaUCuGCGc -3'
miRNA:   3'- -CGUGGggCUGGAGCC----CUACgAGuCGC- -5'
19453 5' -59.6 NC_004685.1 + 534 0.7 0.335173
Target:  5'- gGCGCCgaccucaCCGACCgCGGcuGAUGCUUAGCc -3'
miRNA:   3'- -CGUGG-------GGCUGGaGCC--CUACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 39576 0.7 0.335946
Target:  5'- uCACCCUGACaauCUCGGGAgcggucgaUGCcUAGCGg -3'
miRNA:   3'- cGUGGGGCUG---GAGCCCU--------ACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 7769 0.7 0.342963
Target:  5'- cGCAgCCUGAauggcacUCUCGGGAUGCgcguucaucCAGCGc -3'
miRNA:   3'- -CGUgGGGCU-------GGAGCCCUACGa--------GUCGC- -5'
19453 5' -59.6 NC_004685.1 + 14179 0.69 0.384693
Target:  5'- aGCACgUCGACgCcUGGGAUGcCUCGGCc -3'
miRNA:   3'- -CGUGgGGCUG-GaGCCCUAC-GAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 28914 0.69 0.393261
Target:  5'- aGgACUUCGACC-CGGGccGCUgGGCGg -3'
miRNA:   3'- -CgUGGGGCUGGaGCCCuaCGAgUCGC- -5'
19453 5' -59.6 NC_004685.1 + 66577 0.69 0.401951
Target:  5'- cGCGCCCCGACCU-GGaGGUGU--GGUa -3'
miRNA:   3'- -CGUGGGGCUGGAgCC-CUACGagUCGc -5'
19453 5' -59.6 NC_004685.1 + 6851 0.69 0.401951
Target:  5'- cCGCCgUGACCcCGGGugccccgGCUCAGCc -3'
miRNA:   3'- cGUGGgGCUGGaGCCCua-----CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 23937 0.68 0.419692
Target:  5'- --uCUCCGG-CUCGGGcgGCUCAGgGg -3'
miRNA:   3'- cguGGGGCUgGAGCCCuaCGAGUCgC- -5'
19453 5' -59.6 NC_004685.1 + 55265 0.68 0.428739
Target:  5'- uCGCCUCGGCCUCGGc--GCgCAGCu -3'
miRNA:   3'- cGUGGGGCUGGAGCCcuaCGaGUCGc -5'
19453 5' -59.6 NC_004685.1 + 60976 0.68 0.441595
Target:  5'- cGCACCUCgGugUUCGGGucgaccacgcaggccGUGC-CGGCGa -3'
miRNA:   3'- -CGUGGGG-CugGAGCCC---------------UACGaGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.