miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19453 5' -59.6 NC_004685.1 + 65498 0.67 0.524922
Target:  5'- cCACCaCCGgguaACCgUCGGGcagGCUCGGCc -3'
miRNA:   3'- cGUGG-GGC----UGG-AGCCCua-CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 63297 0.67 0.47466
Target:  5'- -gGCCCCGcACUUCGGGcAgucgaugucacccUGC-CAGCGg -3'
miRNA:   3'- cgUGGGGC-UGGAGCCC-U-------------ACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 1822 0.67 0.475623
Target:  5'- cGCGCCgcgaucccaugUCGACCaUCGGGAcggugaccaGCUCGGCu -3'
miRNA:   3'- -CGUGG-----------GGCUGG-AGCCCUa--------CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 15721 0.67 0.485306
Target:  5'- cCACCCCGAgUU-GGG--GCUCGGCGc -3'
miRNA:   3'- cGUGGGGCUgGAgCCCuaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 35878 0.67 0.485306
Target:  5'- aGCGCCCCGuACaacaUCGagacGGUGUUCGGCu -3'
miRNA:   3'- -CGUGGGGC-UGg---AGCc---CUACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 57905 0.67 0.495082
Target:  5'- uGCGCCgCG-CCUCGGcGAuggcUGCgugCAGCu -3'
miRNA:   3'- -CGUGGgGCuGGAGCC-CU----ACGa--GUCGc -5'
19453 5' -59.6 NC_004685.1 + 57438 0.67 0.503957
Target:  5'- -aGCCCUGcgugcgggucuccACCUCGGGcucuucGCUCGGCu -3'
miRNA:   3'- cgUGGGGC-------------UGGAGCCCua----CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 52918 0.67 0.514895
Target:  5'- uGCGCCuuGgcagugaucGCCUCGGacagcUGCUCGGUGu -3'
miRNA:   3'- -CGUGGggC---------UGGAGCCcu---ACGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 35405 0.67 0.514895
Target:  5'- cCGgCCCGACCggcaCGGuGAUcGaCUCGGCGg -3'
miRNA:   3'- cGUgGGGCUGGa---GCC-CUA-C-GAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 40613 0.68 0.456552
Target:  5'- gGCACCaucuaCGACCU-GGuGAaGUUCGGCGa -3'
miRNA:   3'- -CGUGGg----GCUGGAgCC-CUaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 27053 0.68 0.447172
Target:  5'- uGC-CgCCCGGCCggGGGGUGUUCGGa- -3'
miRNA:   3'- -CGuG-GGGCUGGagCCCUACGAGUCgc -5'
19453 5' -59.6 NC_004685.1 + 60976 0.68 0.441595
Target:  5'- cGCACCUCgGugUUCGGGucgaccacgcaggccGUGC-CGGCGa -3'
miRNA:   3'- -CGUGGGG-CugGAGCCC---------------UACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 68563 0.78 0.096508
Target:  5'- gGCGCCCCGauGCgUCGGGGUGUUCGGa- -3'
miRNA:   3'- -CGUGGGGC--UGgAGCCCUACGAGUCgc -5'
19453 5' -59.6 NC_004685.1 + 56355 0.73 0.223021
Target:  5'- uGCACUUCGGCCacgCGGGccaGCUCAGCc -3'
miRNA:   3'- -CGUGGGGCUGGa--GCCCua-CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 43817 0.73 0.228662
Target:  5'- cCGCCCCGACCUgcgCGGGccGCUC-GCc -3'
miRNA:   3'- cGUGGGGCUGGA---GCCCuaCGAGuCGc -5'
19453 5' -59.6 NC_004685.1 + 19459 0.71 0.298885
Target:  5'- gGCGCgUCGGCggUCGGGAUGUUUGGCGc -3'
miRNA:   3'- -CGUGgGGCUGg-AGCCCUACGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 39576 0.7 0.335946
Target:  5'- uCACCCUGACaauCUCGGGAgcggucgaUGCcUAGCGg -3'
miRNA:   3'- cGUGGGGCUG---GAGCCCU--------ACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 28914 0.69 0.393261
Target:  5'- aGgACUUCGACC-CGGGccGCUgGGCGg -3'
miRNA:   3'- -CgUGGGGCUGGaGCCCuaCGAgUCGC- -5'
19453 5' -59.6 NC_004685.1 + 6851 0.69 0.401951
Target:  5'- cCGCCgUGACCcCGGGugccccgGCUCAGCc -3'
miRNA:   3'- cGUGGgGCUGGaGCCCua-----CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 55265 0.68 0.428739
Target:  5'- uCGCCUCGGCCUCGGc--GCgCAGCu -3'
miRNA:   3'- cGUGGGGCUGGAGCCcuaCGaGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.