miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19453 5' -59.6 NC_004685.1 + 534 0.7 0.335173
Target:  5'- gGCGCCgaccucaCCGACCgCGGcuGAUGCUUAGCc -3'
miRNA:   3'- -CGUGG-------GGCUGGaGCC--CUACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 620 0.66 0.586412
Target:  5'- cGCugCUggcgggcgaCGACCUCGuGcaagucaacgcGGUGCUCAGCa -3'
miRNA:   3'- -CGugGG---------GCUGGAGC-C-----------CUACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 1822 0.67 0.475623
Target:  5'- cGCGCCgcgaucccaugUCGACCaUCGGGAcggugaccaGCUCGGCu -3'
miRNA:   3'- -CGUGG-----------GGCUGG-AGCCCUa--------CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 2364 0.66 0.585373
Target:  5'- gGCACCCCgGGCCagcguUCGGccagcacGA-GCUUGGCGg -3'
miRNA:   3'- -CGUGGGG-CUGG-----AGCC-------CUaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 2451 0.68 0.456552
Target:  5'- -aACgCUGGCC-CGGGGUGCccaaccUCGGCGa -3'
miRNA:   3'- cgUGgGGCUGGaGCCCUACG------AGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 6851 0.69 0.401951
Target:  5'- cCGCCgUGACCcCGGGugccccgGCUCAGCc -3'
miRNA:   3'- cGUGGgGCUGGaGCCCua-----CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 7769 0.7 0.342963
Target:  5'- cGCAgCCUGAauggcacUCUCGGGAUGCgcguucaucCAGCGc -3'
miRNA:   3'- -CGUgGGGCU-------GGAGCCCUACGa--------GUCGC- -5'
19453 5' -59.6 NC_004685.1 + 8265 0.66 0.555419
Target:  5'- ---aCCCGGCCUCGugcgcGGcgGCaaucUCAGCGg -3'
miRNA:   3'- cgugGGGCUGGAGC-----CCuaCG----AGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 13850 0.66 0.576037
Target:  5'- aCACCCUGACCgCGGuGcUGUUCGGg- -3'
miRNA:   3'- cGUGGGGCUGGaGCC-CuACGAGUCgc -5'
19453 5' -59.6 NC_004685.1 + 14179 0.69 0.384693
Target:  5'- aGCACgUCGACgCcUGGGAUGcCUCGGCc -3'
miRNA:   3'- -CGUGgGGCUG-GaGCCCUAC-GAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 15721 0.67 0.485306
Target:  5'- cCACCCCGAgUU-GGG--GCUCGGCGc -3'
miRNA:   3'- cGUGGGGCUgGAgCCCuaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 16414 0.71 0.306037
Target:  5'- gGCACcgCCCGucACCagcgCGGGAUGCcCGGCGu -3'
miRNA:   3'- -CGUG--GGGC--UGGa---GCCCUACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 18602 0.71 0.27821
Target:  5'- cGCGCaCCGAauCCUCGGG--GCUCAGUGc -3'
miRNA:   3'- -CGUGgGGCU--GGAGCCCuaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 19459 0.71 0.298885
Target:  5'- gGCGCgUCGGCggUCGGGAUGUUUGGCGc -3'
miRNA:   3'- -CGUGgGGCUGg-AGCCCUACGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 22039 0.68 0.456552
Target:  5'- cGCGCCUCGgaGCCggaGGGGUcgccucagGCUCGGCc -3'
miRNA:   3'- -CGUGGGGC--UGGag-CCCUA--------CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 23384 0.68 0.447172
Target:  5'- -uGgCCUGAgcuuuCCUCGGGGUGUUCGGUu -3'
miRNA:   3'- cgUgGGGCU-----GGAGCCCUACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 23937 0.68 0.419692
Target:  5'- --uCUCCGG-CUCGGGcgGCUCAGgGg -3'
miRNA:   3'- cguGGGGCUgGAGCCCuaCGAGUCgC- -5'
19453 5' -59.6 NC_004685.1 + 24951 0.66 0.535022
Target:  5'- -gACCCCGACg-CGGGuucGCUgGGCu -3'
miRNA:   3'- cgUGGGGCUGgaGCCCua-CGAgUCGc -5'
19453 5' -59.6 NC_004685.1 + 26320 1.11 0.000417
Target:  5'- cGCACCCCGACCUCGGGAUGCUCAGCGa -3'
miRNA:   3'- -CGUGGGGCUGGAGCCCUACGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 26410 0.74 0.201633
Target:  5'- aGCAUCCCGAggUCGGGGUGCgggGGCa -3'
miRNA:   3'- -CGUGGGGCUggAGCCCUACGag-UCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.