miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19542 5' -60.8 NC_004685.1 + 63674 1.1 0.000419
Target:  5'- cCCGCCGCGGCAUCGAGGACGCCUCGAa -3'
miRNA:   3'- -GGCGGCGCCGUAGCUCCUGCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 10534 0.8 0.071575
Target:  5'- cCCGCCGCGGC--CG-GGugGCUUCGAc -3'
miRNA:   3'- -GGCGGCGCCGuaGCuCCugCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 14428 0.79 0.077593
Target:  5'- uCCGCCGCgaagcgcucGGCAUCuGGGACGCCagCGAg -3'
miRNA:   3'- -GGCGGCG---------CCGUAGcUCCUGCGGa-GCU- -5'
19542 5' -60.8 NC_004685.1 + 59392 0.79 0.079705
Target:  5'- cCCGCuCGCGGUAcucaucgaccuUCGAGGACugauagGCCUCGAu -3'
miRNA:   3'- -GGCG-GCGCCGU-----------AGCUCCUG------CGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 26725 0.77 0.106849
Target:  5'- -aGCCGUGGCAggacaUCGAaccGGACGCUUCGGg -3'
miRNA:   3'- ggCGGCGCCGU-----AGCU---CCUGCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 31455 0.74 0.179429
Target:  5'- gUGCCGgGGC--CGAGGACGCCgaCGAu -3'
miRNA:   3'- gGCGGCgCCGuaGCUCCUGCGGa-GCU- -5'
19542 5' -60.8 NC_004685.1 + 9806 0.74 0.188716
Target:  5'- gCCGCCGCGGC---GAGGugGUCcCGGc -3'
miRNA:   3'- -GGCGGCGCCGuagCUCCugCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 40358 0.74 0.190624
Target:  5'- -gGgCGCGGCAuccggcagaucauccUCGAGGACGCCUgCGc -3'
miRNA:   3'- ggCgGCGCCGU---------------AGCUCCUGCGGA-GCu -5'
19542 5' -60.8 NC_004685.1 + 42024 0.72 0.241693
Target:  5'- aCGCUGaCGGCAaCGAGGugGCgCgCGAg -3'
miRNA:   3'- gGCGGC-GCCGUaGCUCCugCG-GaGCU- -5'
19542 5' -60.8 NC_004685.1 + 11176 0.71 0.266138
Target:  5'- aUCGCCGCGuGCAUCGAGcACGaugCGAu -3'
miRNA:   3'- -GGCGGCGC-CGUAGCUCcUGCggaGCU- -5'
19542 5' -60.8 NC_004685.1 + 2576 0.71 0.266138
Target:  5'- gCGCCGCGccgaGCGUCGcaacGACaGCCUCGAg -3'
miRNA:   3'- gGCGGCGC----CGUAGCuc--CUG-CGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 32834 0.71 0.272554
Target:  5'- aCGCCGCGGUGUCGAGc-CGCg-CGAu -3'
miRNA:   3'- gGCGGCGCCGUAGCUCcuGCGgaGCU- -5'
19542 5' -60.8 NC_004685.1 + 59302 0.71 0.279093
Target:  5'- cCCaCCGCGGCGUCGAuGGcgGCGUCgCGGg -3'
miRNA:   3'- -GGcGGCGCCGUAGCU-CC--UGCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 43070 0.71 0.291861
Target:  5'- cUCGCCGCGGUcggcugggcgcacAUgUGGGGAUGCC-CGAu -3'
miRNA:   3'- -GGCGGCGCCG-------------UA-GCUCCUGCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 49522 0.71 0.292545
Target:  5'- gUCGagaCGCGGCGUCGGGGACagcgggGUCUCc- -3'
miRNA:   3'- -GGCg--GCGCCGUAGCUCCUG------CGGAGcu -5'
19542 5' -60.8 NC_004685.1 + 12652 0.7 0.299459
Target:  5'- gCGCCGCGGCA-CGcGGcCGCUgUCGGa -3'
miRNA:   3'- gGCGGCGCCGUaGCuCCuGCGG-AGCU- -5'
19542 5' -60.8 NC_004685.1 + 5171 0.7 0.299459
Target:  5'- aCCGCCGCGGCuggauuGUCGgcuGGGugGUgUCc- -3'
miRNA:   3'- -GGCGGCGCCG------UAGC---UCCugCGgAGcu -5'
19542 5' -60.8 NC_004685.1 + 51111 0.7 0.320956
Target:  5'- gCUGCCGCGGUggcccuugAUgGGGGugGCCgacaGAc -3'
miRNA:   3'- -GGCGGCGCCG--------UAgCUCCugCGGag--CU- -5'
19542 5' -60.8 NC_004685.1 + 26960 0.7 0.320956
Target:  5'- aCGUCGCGGaa-CGAGGugGCggCGAa -3'
miRNA:   3'- gGCGGCGCCguaGCUCCugCGgaGCU- -5'
19542 5' -60.8 NC_004685.1 + 58441 0.7 0.320956
Target:  5'- aC-CCGCGGCGUgcAGGAUGuCCUCGGu -3'
miRNA:   3'- gGcGGCGCCGUAgcUCCUGC-GGAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.