miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19542 5' -60.8 NC_004685.1 + 39252 0.68 0.40938
Target:  5'- aCGgCGCgaacGGCGUCGGGcaACGCCUCGc -3'
miRNA:   3'- gGCgGCG----CCGUAGCUCc-UGCGGAGCu -5'
19542 5' -60.8 NC_004685.1 + 52520 0.69 0.343587
Target:  5'- gCGCCGCGGCGaaCGccGACGCCaUCa- -3'
miRNA:   3'- gGCGGCGCCGUa-GCucCUGCGG-AGcu -5'
19542 5' -60.8 NC_004685.1 + 30217 0.69 0.351382
Target:  5'- gCGCCGCGGcCAUCuGGGcGACGCacaagcugUCGGa -3'
miRNA:   3'- gGCGGCGCC-GUAG-CUC-CUGCGg-------AGCU- -5'
19542 5' -60.8 NC_004685.1 + 8175 0.69 0.359301
Target:  5'- gCCGCCGCgcacgaggccGGguUCGAGGAgGgCUCc- -3'
miRNA:   3'- -GGCGGCG----------CCguAGCUCCUgCgGAGcu -5'
19542 5' -60.8 NC_004685.1 + 50344 0.69 0.359301
Target:  5'- uUCGCCGCGGCGcaucUUGccGAuCGUCUCGGc -3'
miRNA:   3'- -GGCGGCGCCGU----AGCucCU-GCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 32973 0.69 0.359301
Target:  5'- cCCGCCGUGGCAgcagaUCGAgcagaaGGGCGCaaCGc -3'
miRNA:   3'- -GGCGGCGCCGU-----AGCU------CCUGCGgaGCu -5'
19542 5' -60.8 NC_004685.1 + 14560 0.69 0.367345
Target:  5'- aCCGCCGCcacugcuggauuGGCGUCGcAGG-CGaCgUCGAc -3'
miRNA:   3'- -GGCGGCG------------CCGUAGC-UCCuGC-GgAGCU- -5'
19542 5' -60.8 NC_004685.1 + 8776 0.69 0.375511
Target:  5'- gCCGUCGUGGC-UUGAGGgcuugaagcucACGCCgCGGu -3'
miRNA:   3'- -GGCGGCGCCGuAGCUCC-----------UGCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 31486 0.69 0.383799
Target:  5'- cCCGCCGUGGgugcaugcgAUCGAGGACauCUUCGGc -3'
miRNA:   3'- -GGCGGCGCCg--------UAGCUCCUGc-GGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 16006 0.69 0.343587
Target:  5'- cCCGCCGUGGCuggucaacGUCGAgcugaagaaGGGCGCgCgccgCGAa -3'
miRNA:   3'- -GGCGGCGCCG--------UAGCU---------CCUGCG-Ga---GCU- -5'
19542 5' -60.8 NC_004685.1 + 13380 0.7 0.335917
Target:  5'- cUCGCCuCGGcCAUCGAGGACuGUC-CGGu -3'
miRNA:   3'- -GGCGGcGCC-GUAGCUCCUG-CGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 30836 0.7 0.328374
Target:  5'- -gGCUcaGUGGCAggUCGAGGACGCCaaGGu -3'
miRNA:   3'- ggCGG--CGCCGU--AGCUCCUGCGGagCU- -5'
19542 5' -60.8 NC_004685.1 + 14428 0.79 0.077593
Target:  5'- uCCGCCGCgaagcgcucGGCAUCuGGGACGCCagCGAg -3'
miRNA:   3'- -GGCGGCG---------CCGUAGcUCCUGCGGa-GCU- -5'
19542 5' -60.8 NC_004685.1 + 9806 0.74 0.188716
Target:  5'- gCCGCCGCGGC---GAGGugGUCcCGGc -3'
miRNA:   3'- -GGCGGCGCCGuagCUCCugCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 40358 0.74 0.190624
Target:  5'- -gGgCGCGGCAuccggcagaucauccUCGAGGACGCCUgCGc -3'
miRNA:   3'- ggCgGCGCCGU---------------AGCUCCUGCGGA-GCu -5'
19542 5' -60.8 NC_004685.1 + 42024 0.72 0.241693
Target:  5'- aCGCUGaCGGCAaCGAGGugGCgCgCGAg -3'
miRNA:   3'- gGCGGC-GCCGUaGCUCCugCG-GaGCU- -5'
19542 5' -60.8 NC_004685.1 + 59302 0.71 0.279093
Target:  5'- cCCaCCGCGGCGUCGAuGGcgGCGUCgCGGg -3'
miRNA:   3'- -GGcGGCGCCGUAGCU-CC--UGCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 43070 0.71 0.291861
Target:  5'- cUCGCCGCGGUcggcugggcgcacAUgUGGGGAUGCC-CGAu -3'
miRNA:   3'- -GGCGGCGCCG-------------UA-GCUCCUGCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 12652 0.7 0.299459
Target:  5'- gCGCCGCGGCA-CGcGGcCGCUgUCGGa -3'
miRNA:   3'- gGCGGCGCCGUaGCuCCuGCGG-AGCU- -5'
19542 5' -60.8 NC_004685.1 + 58441 0.7 0.320956
Target:  5'- aC-CCGCGGCGUgcAGGAUGuCCUCGGu -3'
miRNA:   3'- gGcGGCGCCGUAgcUCCUGC-GGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.